RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 G3V2L1 256 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 OGTO15294 1046 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 ZNF354AO60765 605 aaPredicted RBP3.39□□□□□ -1.87
VPS13C-208ENST00000559119 ELAVL4P26378 380 aaKnown RBP3.39□□□□□ -1.87
VPS13C-208ENST00000559119 MAPK4P31152 587 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 MATR3P43243 847 aaKnown RBP eCLIP3.39□□□□□ -1.87
VPS13C-208ENST00000559119 MPP1Q00013 466 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 SPECC1Q5M775 1068 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 RSBN1Q5VWQ0 802 aaPredicted RBP3.39□□□□□ -1.87
VPS13C-208ENST00000559119 OLFML2AQ68BL7 652 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 C3P1Q6ZMU1 363 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 CD177Q8N6Q3 437 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 OR10G7Q8NGN6 311 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 SLAMF9Q96A28 289 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 PAFAH2Q99487 392 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 JPT2Q9H910 190 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 BAIAP2L1Q9UHR4 511 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 CHKBQ9Y259 395 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 COL4A4P53420 1690 aaPredicted RBP3.39□□□□□ -1.87
VPS13C-208ENST00000559119 FEZF1A0PJY2 475 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 PI4KAP2A4QPH2 592 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 CTDSP2O14595 271 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 EIF3JO75822 258 aaKnown RBP3.38□□□□□ -1.87
VPS13C-208ENST00000559119 GP1BBP13224 206 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 AOC1P19801 751 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 HADHAP40939 763 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 ITGA7Q13683 1181 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 TRIM29Q14134 588 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 PRR30Q53SZ7 412 aaPredicted RBP3.38□□□□□ -1.87
VPS13C-208ENST00000559119 IGSF11Q5DX21 431 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 JAKMIP3Q5VZ66 844 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 KRT79Q5XKE5 535 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 FCRLAQ7L513 359 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 NDUFAF2Q8N183 169 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 MCUQ8NE86 351 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 CCDC3Q9BQI4 270 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 MAK16Q9BXY0 300 aaKnown RBP3.38□□□□□ -1.87
VPS13C-208ENST00000559119 EQTNQ9NQ60 294 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 PADI2Q9Y2J8 665 aa3.38□□□□□ -1.87
VPS13C-208ENST00000559119 OR2A25A4D2G3 310 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 BCL10O95999 233 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 ALDH3A2P51648 485 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 NDPQ00604 133 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 ZNF146Q15072 292 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 ALFQ53S48 1182 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 RAB41Q5JT25 222 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 RNLSQ5VYX0 342 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 TMEM64Q6YI46 380 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 CATSPER3Q86XQ3 398 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 FAM89BQ8N5H3 189 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 RTL3Q8N8U3 475 aaKnown RBP3.37□□□□□ -1.87
VPS13C-208ENST00000559119 OR52B6Q8NGF0 335 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 NSMAFQ92636 917 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 SPDL1Q96EA4 605 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 B3GALT6Q96L58 329 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 ZMYND12Q9H0C1 365 aa3.37□□□□□ -1.87
VPS13C-208ENST00000559119 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.37□□□□□ -1.87
VPS13C-208ENST00000559119 FBXO2Q9UK22 296 aaPredicted RBP3.37□□□□□ -1.87
VPS13C-208ENST00000559119 PGPEP1LA6NFU8 196 aa3.36□□□□□ -1.87
VPS13C-208ENST00000559119 J3KRW8 73 aa3.36□□□□□ -1.87
VPS13C-208ENST00000559119 TRAFD1O14545 582 aaPredicted RBP3.36□□□□□ -1.87
VPS13C-208ENST00000559119 HAT1O14929 419 aa3.36□□□□□ -1.87
VPS13C-208ENST00000559119 SURF4O15260 269 aa3.36□□□□□ -1.87
VPS13C-208ENST00000559119 USO1O60763 962 aaKnown RBP3.36□□□□□ -1.87
VPS13C-208ENST00000559119 NXPH4O95158 308 aa3.36□□□□□ -1.87
VPS13C-208ENST00000559119 CD4P01730 458 aa3.36□□□□□ -1.87
VPS13C-208ENST00000559119 IGHV2-70P01814 119 aa3.36□□□□□ -1.87
VPS13C-208ENST00000559119 FDPSP14324 419 aaKnown RBP3.36□□□□□ -1.87
VPS13C-208ENST00000559119 PSMB10P40306 273 aa3.36□□□□□ -1.87
VPS13C-208ENST00000559119 ARF3P61204 181 aaPredicted RBP3.36□□□□□ -1.87
VPS13C-208ENST00000559119 ARF1P84077 181 aaKnown RBP3.36□□□□□ -1.87
VPS13C-208ENST00000559119 EIF4EBP2Q13542 120 aaPredicted RBP3.36□□□□□ -1.87
VPS13C-208ENST00000559119 TMEM211Q6ICI0 200 aa3.36□□□□□ -1.87
VPS13C-208ENST00000559119 POC5Q8NA72 575 aa3.36□□□□□ -1.87
VPS13C-208ENST00000559119 OR4K1Q8NGD4 311 aa3.36□□□□□ -1.87
VPS13C-208ENST00000559119 OR4D10Q8NGI6 311 aa3.36□□□□□ -1.87
VPS13C-208ENST00000559119 MORC4Q8TE76 937 aa3.36□□□□□ -1.87
VPS13C-208ENST00000559119 SUCLA2Q9P2R7 463 aaPredicted RBP3.36□□□□□ -1.87
VPS13C-208ENST00000559119 WBP11Q9Y2W2 641 aaKnown RBP3.36□□□□□ -1.87
VPS13C-208ENST00000559119 TRBV4-1A0A0J9YWV2 114 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 TRBV5-5A0A0J9YX44 114 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 AP3D1O14617 1153 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 VILLO15195 856 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 IPO8O15397 1037 aaKnown RBP3.35□□□□□ -1.87
VPS13C-208ENST00000559119 SH3BGRLO75368 114 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 ATP1B1P05026 303 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 PCP11498 1178 aaKnown RBP3.35□□□□□ -1.87
VPS13C-208ENST00000559119 KHKP50053 298 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 ATP4BP51164 291 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 FKBP3Q00688 224 aaKnown RBP3.35□□□□□ -1.87
VPS13C-208ENST00000559119 MCMDC2Q4G0Z9 681 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 REG3GQ6UW15 175 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 NUP54Q7Z3B4 507 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 PTPMT1Q8WUK0 201 aaPredicted RBP3.35□□□□□ -1.87
VPS13C-208ENST00000559119 UBE2Q2Q8WVN8 375 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 LPGAT1Q92604 370 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 SEPHS2Q99611 448 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 NLGN3Q9NZ94 848 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 PRDM4Q9UKN5 801 aa3.35□□□□□ -1.87
VPS13C-208ENST00000559119 PLCL2Q9UPR0 1127 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms