RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TTYH2Q9BSA4 534 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 GFRA2O00451 464 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 DSCR3O14972 297 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 LRRTM2O43300 516 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 KLK8O60259 260 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 GUCY1B2O75343 617 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 UPK1BO75841 260 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 ADRA2AP08913 450 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 RRM2P31350 389 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 FEN1P39748 380 aaKnown RBP11.98□□□□□ -0.49
LDLR-205ENST00000557933 SMARCB1Q12824 385 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 BOP1Q14137 746 aaKnown RBP11.98□□□□□ -0.49
LDLR-205ENST00000557933 GANABQ14697 944 aaKnown RBP11.98□□□□□ -0.49
LDLR-205ENST00000557933 MED22Q15528 200 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 DEPDC1Q5TB30 811 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 GALNT7Q86SF2 657 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 TMEM173Q86WV6 379 aaPredicted RBP11.98□□□□□ -0.49
LDLR-205ENST00000557933 LRRC49Q8IUZ0 686 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 KCNJ9Q92806 393 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 GTPBP3Q969Y2 492 aaKnown RBP11.98□□□□□ -0.49
LDLR-205ENST00000557933 PSKH2Q96QS6 385 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 CPPED1Q9BRF8 314 aaPredicted RBP11.98□□□□□ -0.49
LDLR-205ENST00000557933 DUSP21Q9H596 190 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 ELOVL6Q9H5J4 265 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 CLMPQ9H6B4 373 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 C8orf4Q9NR00 106 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 RNF6Q9Y252 685 aa11.98□□□□□ -0.49
LDLR-205ENST00000557933 PATJQ8NI35 1801 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 WASH4PA8MWX3 477 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 ADAM12O43184 909 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 SCELO95171 688 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 CCDC159P0C7I6 412 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 SDC1P18827 310 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 ARHGDIAP52565 204 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 PPP5CP53041 499 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 GABARAPL2P60520 117 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 CAMK2GQ13555 558 aaPredicted RBP11.97□□□□□ -0.49
LDLR-205ENST00000557933 GDPD3Q7L5L3 318 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 EFL1Q7Z2Z2 1120 aaKnown RBP11.97□□□□□ -0.49
LDLR-205ENST00000557933 HIPK1Q86Z02 1210 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 TRPV1Q8NER1 839 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 OR9Q2Q8NGE9 314 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 S100ZQ8WXG8 99 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 SH3KBP1Q96B97 665 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 OR5M11Q96RB7 305 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 SLX1AQ9BQ83 275 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 MGME1Q9BQP7 344 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 POPDC3Q9HBV1 291 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 NEK6Q9HC98 313 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 USE1Q9NZ43 259 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 IGLV3-10A0A075B6K4 115 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 CLIC1O00299 241 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 WWP2O00308 870 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 SMAD6O43541 496 aaKnown RBP11.97□□□□□ -0.49
LDLR-205ENST00000557933 FHP07954 510 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 EPB42P16452 691 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 FLT3LGP49771 235 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 NPRL3Q12980 569 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 DMC1Q14565 340 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 BCDIN3DQ7Z5W3 292 aaKnown RBP11.97□□□□□ -0.49
LDLR-205ENST00000557933 SLC44A2Q8IWA5 706 aaPredicted RBP11.97□□□□□ -0.49
LDLR-205ENST00000557933 WFDC5Q8TCV5 224 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 VMP1Q96GC9 406 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 SPATA17Q96L03 361 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 FEVQ99581 238 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 TSEN34Q9BSV6 310 aaKnown RBP11.97□□□□□ -0.49
LDLR-205ENST00000557933 TRIM62Q9BVG3 475 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 ADPRHL2Q9NX46 363 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 NUDT4Q9NZJ9 180 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 SLC22A14Q9Y267 594 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 FABP3P05413 133 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 ARF5P84085 180 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 GRIK2Q13002 908 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 SYT6Q5T7P8 510 aaPredicted RBP11.97□□□□□ -0.49
LDLR-205ENST00000557933 ANKS3Q6ZW76 656 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 ADAMTSL2Q86TH1 951 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 TMEM132CQ8N3T6 1108 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 BEND7Q8N7W2 519 aaPredicted RBP11.97□□□□□ -0.49
LDLR-205ENST00000557933 CRLS1Q9UJA2 301 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 ACSL6Q9UKU0 697 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 PCDHB5Q9Y5E4 795 aa11.97□□□□□ -0.49
LDLR-205ENST00000557933 PTPRDP23468 1912 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 A0A0U1RQF3 1178 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 OR2A25A4D2G3 310 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 SAP18O00422 153 aaKnown RBP11.96□□□□□ -0.49
LDLR-205ENST00000557933 FPGTO14772 594 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 SLC16A6O15403 523 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 PRAMEF4O60810 478 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 APOL3O95236 402 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 CKMT1AP12532 417 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 RHOAP61586 193 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 MRPS15P82914 257 aaKnown RBP11.96□□□□□ -0.49
LDLR-205ENST00000557933 PRKCZQ05513 592 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 PRAMEF9Q5VWM5 478 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 SHQ1Q6PI26 577 aaKnown RBP11.96□□□□□ -0.49
LDLR-205ENST00000557933 TAS1R1Q7RTX1 841 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 HMGN2P46Q86SG4 172 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 VRK3Q8IV63 474 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 SLAIN1Q8ND83 568 aa11.96□□□□□ -0.49
LDLR-205ENST00000557933 C7orf57Q8NEG2 295 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms