RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SHROOM3Q8TF72 1996 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 SAGE2PA6NJ88 616 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 NME4O00746 187 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 LEFTY1O75610 366 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 ZNF806P0C7X5 589 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 HSD17B1P14061 328 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 IL7RP16871 459 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 CD68P34810 354 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-216ENST00000552909 YBEYP58557 167 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-216ENST00000552909 C19orf57Q0VDD7 668 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 CDK10Q15131 360 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 ZIK1Q3SY52 487 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-216ENST00000552909 PARP15Q460N3 678 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 ARSIQ5FYB1 569 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 ATXN7L2Q5T6C5 722 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-216ENST00000552909 TMEM236Q5W0B7 351 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 LYSMD4Q5XG99 296 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-216ENST00000552909 TBC1D21Q8IYX1 336 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 ELMOD2Q8IZ81 293 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 C8orf59Q8N0T1 100 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-216ENST00000552909 NDNFQ8TB73 568 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 OR8D1Q8WZ84 308 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 SGCDQ92629 289 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 MFSD3Q96ES6 412 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 EXOC2Q96KP1 924 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 TEKT5Q96M29 485 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 DEPDC7Q96QD5 511 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 VAT1Q99536 393 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 OMDQ99983 421 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 DHRS9Q9BPW9 319 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 HOPXQ9BPY8 73 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-216ENST00000552909 CLPBQ9H078 707 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 BTBD1Q9H0C5 482 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 DSN1Q9H410 356 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 PDFQ9HBH1 243 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 EIF2B3Q9NR50 452 aaKnown RBP7.45□□□□□ -1.22
LIMA1-216ENST00000552909 CHRAC1Q9NRG0 131 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 DDX28Q9NUL7 540 aaKnown RBP7.45□□□□□ -1.22
LIMA1-216ENST00000552909 UBP1Q9NZI7 540 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 ZNF639Q9UID6 485 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 PILRBQ9UKJ0 227 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 PDE10AQ9Y233 779 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 CAB39Q9Y376 341 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-216ENST00000552909 FIS1Q9Y3D6 152 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 UGT2A1Q9Y4X1 527 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 MAU2Q9Y6X3 613 aa7.45□□□□□ -1.22
LIMA1-216ENST00000552909 BBIP1A8MTZ0 92 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 METTL12A8MUP2 240 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ZNF99A8MXY4 864 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ARPC2O15144 300 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 INPP4BO15327 924 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 NPHS1O60500 1241 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 GJB3O75712 270 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 INMTO95050 263 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 SEMA4FO95754 770 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 HTR1AP08908 422 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 SBK3P0C264 359 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 C5AR1P21730 350 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ABCG1P45844 678 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 GLRBP48167 497 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 SEPHS1P49903 392 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 RENBPP51606 427 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 GP2P55259 537 aaKnown RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 TPD52P55327 224 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 CNTN1Q12860 1018 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 KRR1Q13601 381 aaKnown RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 CSRP2Q16527 193 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ADPRMQ3LIE5 342 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 CARD16Q5EG05 197 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 CATSPEREQ5SY80 951 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 MARC1Q5VT66 337 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 DESI1Q6ICB0 168 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 NEK5Q6P3R8 708 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 NCEH1Q6PIU2 408 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 SYT12Q8IV01 421 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 RGL4Q8IZJ4 473 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 TMEM151AQ8N4L1 468 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 SVOPQ8N4V2 548 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ESX1Q8N693 406 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 GRPEL2Q8TAA5 225 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 STYXQ8WUJ0 223 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ARRDC3Q96B67 414 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 BIRC7Q96CA5 298 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 RMDN1Q96DB5 314 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 COQ7Q99807 217 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 CENPOQ9BU64 300 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 BDH2Q9BUT1 245 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 SP110Q9HB58 689 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ANKHQ9HCJ1 492 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 GIMAP4Q9NUV9 329 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 STMN3Q9NZ72 180 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 NPAP1Q9NZP6 1156 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ABCD2Q9UBJ2 740 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 EIF2B4Q9UI10 523 aaKnown RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ANAPC2Q9UJX6 822 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 FBXO9Q9UK97 447 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 PCDHGA5Q9Y5G8 931 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 PMF1-BGLAPU3KQ54 211 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 MN1Q10571 1320 aaPredicted RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms