RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 DTWD1Q8N5C7 304 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 HORMAD2Q8N7B1 307 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 DNAAF3Q8N9W5 541 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 HMGCLL1Q8TB92 370 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 ADAMTS18Q8TE60 1221 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 CA5BP1Q8WTZ4 195 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 RERGQ96A58 199 aaPredicted RBP16.07■□□□□ 0.16
VPS29-204ENST00000548259 MMABQ96EY8 250 aaPredicted RBP16.07■□□□□ 0.16
VPS29-204ENST00000548259 PANX3Q96QZ0 392 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 OSBPL8Q9BZF1 889 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 GOLPH3Q9H4A6 298 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 COQ3Q9NZJ6 369 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 C19orf25Q9UFG5 118 aaPredicted RBP16.07■□□□□ 0.16
VPS29-204ENST00000548259 MKL2Q9ULH7 1088 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 TTC7AQ9ULT0 858 aaPredicted RBP16.07■□□□□ 0.16
VPS29-204ENST00000548259 ZNF835Q9Y2P0 537 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 LOC105369274A0A096LPK9 316 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 LOC102723532A0A0G2JNH3 316 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 OR51F1A6NGY5 319 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 A8MUI8 341 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 C19orf84I3L1E1 186 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 SLCO2B1O94956 709 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 C8orf89P0DMQ9 161 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 CD46P15529 392 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 EEF1DP29692 281 aaKnown RBP16.06■□□□□ 0.16
VPS29-204ENST00000548259 KIR3DL1P43629 444 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 PMP22Q01453 160 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 PRTGQ2VWP7 1150 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 MEX3BQ6ZN04 569 aaKnown RBP16.06■□□□□ 0.16
VPS29-204ENST00000548259 VRK3Q8IV63 474 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 OR4N4Q8N0Y3 316 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 CSNK1A1LQ8N752 337 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 TMEM178AQ8NBL3 297 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 OR6P1Q8NGX9 317 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 OR4L1Q8NH43 312 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 PHF10Q8WUB8 498 aaKnown RBP16.06■□□□□ 0.16
VPS29-204ENST00000548259 HDAC10Q969S8 669 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 C10orf90Q96M02 699 aa16.06■□□□□ 0.16
VPS29-204ENST00000548259 OR2A25A4D2G3 310 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 GOLGA6L9A6NEM1 432 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 PRRG2O14669 202 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 MED26O95402 600 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 TSPAN12O95859 305 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 CELA2AP08217 269 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 CYC1P08574 325 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 PKMP14618 531 aaKnown RBP16.05■□□□□ 0.16
VPS29-204ENST00000548259 PTPN7P35236 360 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 MAGEA1P43355 309 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 PRAMEP78395 509 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 PCOLCEQ15113 449 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 NDUFA9Q16795 377 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 PTRHD1Q6GMV3 140 aaKnown RBP16.05■□□□□ 0.16
VPS29-204ENST00000548259 KRT35Q92764 455 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 UTP23Q9BRU9 249 aaKnown RBP16.05■□□□□ 0.16
VPS29-204ENST00000548259 DRC3Q9H069 523 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 SPATA7Q9P0W8 599 aa16.05■□□□□ 0.16
VPS29-204ENST00000548259 FOXO6A8MYZ6 492 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 H0YGG7 62 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 PRMT5O14744 637 aaPredicted RBP16.04■□□□□ 0.16
VPS29-204ENST00000548259 MFAP3LO75121 409 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 SUN1O94901 812 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 C1orf105O95561 183 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 GOT2P00505 430 aaKnown RBP16.04■□□□□ 0.16
VPS29-204ENST00000548259 AOAHP28039 575 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 PSMB5P28074 263 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 SLC26A3P40879 764 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 AVPR1BP47901 424 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 KRTAP10-9P60411 292 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 ARF3P61204 181 aaPredicted RBP16.04■□□□□ 0.16
VPS29-204ENST00000548259 CSNK1G2P78368 415 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 CDH17Q12864 832 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 BTBD16Q32M84 506 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 CCDC38Q502W7 563 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 ACER2Q5QJU3 275 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 TMEM205Q6UW68 189 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 MICALCLQ6ZW33 695 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 OTOAQ7RTW8 1153 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 CNGA4Q8IV77 575 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 GHDCQ8N2G8 530 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 OR2A1Q8NGT9 310 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 POM121Q96HA1 1249 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 CALR3Q96L12 384 aaKnown RBP16.04■□□□□ 0.16
VPS29-204ENST00000548259 IMMP1LQ96LU5 166 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 FAM118BQ9BPY3 351 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 DPH7Q9BTV6 452 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 ENKD1Q9H0I2 346 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 PIH1D1Q9NWS0 290 aaKnown RBP16.04■□□□□ 0.16
VPS29-204ENST00000548259 STOX2Q9P2F5 926 aaPredicted RBP16.04■□□□□ 0.16
VPS29-204ENST00000548259 RIMKLBQ9ULI2 386 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 PCDHA3Q9Y5H8 950 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 MED13LQ71F56 2210 aa16.04■□□□□ 0.16
VPS29-204ENST00000548259 ERI2A8K979 691 aaKnown RBP16.03■□□□□ 0.16
VPS29-204ENST00000548259 NPIPA5E9PKD4 350 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 E9PLN8 166 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 DIAPH2O60879 1101 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 CCNDBP1O95273 360 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 CTNNA1P35221 906 aaKnown RBP16.03■□□□□ 0.16
VPS29-204ENST00000548259 RPA3P35244 121 aaPredicted RBP16.03■□□□□ 0.16
VPS29-204ENST00000548259 TTPAP49638 278 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 RWDD2BP57060 319 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms