RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 KLHL25Q9H0H3 589 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 PDE7BQ9NP56 450 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 SLC6A20Q9NP91 592 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 TMEM184CQ9NVA4 438 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 OXSMQ9NWU1 459 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 SOHLH2Q9NX45 425 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 AKAP7Q9P0M2 348 aaPredicted RBP16.47■□□□□ 0.23
LIG1-204ENST00000542460 ANKMY1Q9P2S6 941 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 SNX7Q9UNH6 387 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 BTRCQ9Y297 605 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 KLHL20Q9Y2M5 609 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 ANGPTL3Q9Y5C1 460 aa16.47■□□□□ 0.23
LIG1-204ENST00000542460 IGKV1-8A0A0C4DH67 115 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 TMEM120BA0PK00 339 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 LRRC14BA6NHZ5 514 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 PIK3CGP48736 1102 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 HERVK_113P63132 956 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 TARDBPQ13148 414 aaKnown RBP eCLIP16.46■□□□□ 0.231e-7■■■■□ 25.2
LIG1-204ENST00000542460 MPP2Q14168 576 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 C16orf72Q14CZ0 275 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 TMTC4Q5T4D3 741 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 TEX9Q8N6V9 391 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 CMKLR1Q99788 373 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 ERVK-6Q9BXR3 956 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 CHRNA10Q9GZZ6 450 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 CUEDC1Q9NWM3 386 aaPredicted RBP16.46■□□□□ 0.23
LIG1-204ENST00000542460 SH2B3Q9UQQ2 575 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 SPEGQ15772 3267 aa16.46■□□□□ 0.23
LIG1-204ENST00000542460 H7BY64 318 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 E2F3O00716 465 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 CLGNO14967 610 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 KATNA1O75449 491 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 CDH1P12830 882 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 DNAJB13P59910 316 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 EIF3IQ13347 325 aaKnown RBP16.45■□□□□ 0.22
LIG1-204ENST00000542460 GTF2H2Q13888 395 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 PCLAFQ15004 111 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 ZIC1Q15915 447 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 ZNF678Q5SXM1 525 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 FCRL6Q6DN72 434 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 GTF2H2CQ6P1K8 395 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 ADCK2Q7Z695 626 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 D2HGDHQ8N465 521 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 ABHD11Q8NFV4 315 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 L3HYPDHQ96EM0 354 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 PRAP1Q96NZ9 151 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 PLCD4Q9BRC7 762 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 PCTPQ9UKL6 214 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 CCDC187A0A096LP49 1063 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 OR2A25A4D2G3 310 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 FAM149AA5PLN7 773 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 PRAMEF10O60809 474 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 RPS17P08708 135 aaKnown RBP16.45■□□□□ 0.22
LIG1-204ENST00000542460 MLLT3P42568 568 aaPredicted RBP16.45■□□□□ 0.22
LIG1-204ENST00000542460 CCR8P51685 355 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 NAA20P61599 178 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 RELAQ04206 551 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 ASPHQ12797 758 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 HSP90B2PQ58FF3 399 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 CATSPEREQ5SY80 951 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 LIPMQ5VYY2 423 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 ZNF425Q6IV72 752 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 NXPE4Q6UWF7 544 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 GOLGA7Q7Z5G4 137 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 C10orf107Q8IVU9 208 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 PPP4R1Q8TF05 950 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 TMEM237Q96Q45 408 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 PELI2Q9HAT8 420 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 NKIRAS1Q9NYS0 192 aa16.45■□□□□ 0.22
LIG1-204ENST00000542460 E7EQ34 232 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 TRIM13O60858 407 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 SUPT7LO94864 414 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 DHRS4L1P0CG22 281 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 EZRP15311 586 aaKnown RBP16.44■□□□□ 0.22
LIG1-204ENST00000542460 EPORP19235 508 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 HPDP32754 393 aaPredicted RBP16.44■□□□□ 0.22
LIG1-204ENST00000542460 PCDH1Q08174 1060 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 GPS2Q13227 327 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 UNC50Q53HI1 259 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 ATG9BQ674R7 924 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 SLCO4C1Q6ZQN7 724 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 RAB11FIP2Q7L804 512 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 TMPRSS11BQ86T26 416 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 PAQR7Q86WK9 346 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 ANKRD42Q8N9B4 389 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 OR4K1Q8NGD4 311 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 ZNF483Q8TF39 744 aaPredicted RBP16.44■□□□□ 0.22
LIG1-204ENST00000542460 SREK1Q8WXA9 508 aaKnown RBP16.44■□□□□ 0.22
LIG1-204ENST00000542460 SELENOSQ9BQE4 189 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 EHD1Q9H4M9 534 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 IPPKQ9H8X2 491 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 FAM60AQ9NP50 221 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 MED4Q9NPJ6 270 aa16.44■□□□□ 0.22
LIG1-204ENST00000542460 ANKRD12Q6UB98 2062 aa16.43■□□□□ 0.22
LIG1-204ENST00000542460 COL27A1Q8IZC6 1860 aaPredicted RBP16.43■□□□□ 0.22
LIG1-204ENST00000542460 EFCAB7A8K855 629 aa16.43■□□□□ 0.22
LIG1-204ENST00000542460 BIRC5O15392 142 aa16.43■□□□□ 0.22
LIG1-204ENST00000542460 HYAL3O43820 417 aaPredicted RBP16.43■□□□□ 0.22
LIG1-204ENST00000542460 H2AFYO75367 372 aaKnown RBP16.43■□□□□ 0.22
LIG1-204ENST00000542460 BPGMP07738 259 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms