RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 CDC16Q13042 620 aa9□□□□□ -0.97
DDX55-208ENST00000541259 STX3Q13277 289 aa9□□□□□ -0.97
DDX55-208ENST00000541259 RCN2Q14257 317 aa9□□□□□ -0.97
DDX55-208ENST00000541259 RBBP7Q16576 425 aa9□□□□□ -0.97
DDX55-208ENST00000541259 ARL13AQ5H913 290 aaPredicted RBP9□□□□□ -0.97
DDX55-208ENST00000541259 CATSPEREQ5SY80 951 aa9□□□□□ -0.97
DDX55-208ENST00000541259 KIAA1614Q5VZ46 1190 aa9□□□□□ -0.97
DDX55-208ENST00000541259 ICE2Q659A1 982 aa9□□□□□ -0.97
DDX55-208ENST00000541259 LCTLQ6UWM7 567 aa9□□□□□ -0.97
DDX55-208ENST00000541259 USP53Q70EK8 1073 aa9□□□□□ -0.97
DDX55-208ENST00000541259 VASH1Q7L8A9 365 aaPredicted RBP9□□□□□ -0.97
DDX55-208ENST00000541259 LRRC70Q7Z2Q7 622 aa9□□□□□ -0.97
DDX55-208ENST00000541259 TMPRSS9Q7Z410 1059 aa9□□□□□ -0.97
DDX55-208ENST00000541259 SPRED1Q7Z699 444 aa9□□□□□ -0.97
DDX55-208ENST00000541259 SYVN1Q86TM6 617 aa9□□□□□ -0.97
DDX55-208ENST00000541259 DCBLD1Q8N8Z6 715 aa9□□□□□ -0.97
DDX55-208ENST00000541259 OR6C4Q8NGE1 309 aa9□□□□□ -0.97
DDX55-208ENST00000541259 OR52B6Q8NGF0 335 aa9□□□□□ -0.97
DDX55-208ENST00000541259 BAHD1Q8TBE0 780 aaPredicted RBP9□□□□□ -0.97
DDX55-208ENST00000541259 IFI44Q8TCB0 444 aa9□□□□□ -0.97
DDX55-208ENST00000541259 PPP4R1Q8TF05 950 aa9□□□□□ -0.97
DDX55-208ENST00000541259 SREK1Q8WXA9 508 aaKnown RBP9□□□□□ -0.97
DDX55-208ENST00000541259 NCSTNQ92542 709 aa9□□□□□ -0.97
DDX55-208ENST00000541259 NEIL2Q969S2 332 aa9□□□□□ -0.97
DDX55-208ENST00000541259 CNDP1Q96KN2 507 aa9□□□□□ -0.97
DDX55-208ENST00000541259 MAGEB18Q96M61 343 aa9□□□□□ -0.97
DDX55-208ENST00000541259 CDK15Q96Q40 435 aa9□□□□□ -0.97
DDX55-208ENST00000541259 CCDC3Q9BQI4 270 aa9□□□□□ -0.97
DDX55-208ENST00000541259 DRC3Q9H069 523 aa9□□□□□ -0.97
DDX55-208ENST00000541259 KLHL25Q9H0H3 589 aa9□□□□□ -0.97
DDX55-208ENST00000541259 CUEDC1Q9NWM3 386 aaPredicted RBP9□□□□□ -0.97
DDX55-208ENST00000541259 TMEM9Q9P0T7 183 aa9□□□□□ -0.97
DDX55-208ENST00000541259 FTSJ1Q9UET6 329 aa9□□□□□ -0.97
DDX55-208ENST00000541259 ATXN7L1Q9ULK2 861 aaPredicted RBP9□□□□□ -0.97
DDX55-208ENST00000541259 ANGPTL3Q9Y5C1 460 aa9□□□□□ -0.97
DDX55-208ENST00000541259 PCDHB11Q9Y5F2 797 aa9□□□□□ -0.97
DDX55-208ENST00000541259 CNOT1A5YKK6 2376 aaKnown RBP9□□□□□ -0.97
DDX55-208ENST00000541259 SCN2AQ99250 2005 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 CEP250Q9BV73 2442 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 IGKV1-8A0A0C4DH67 115 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 A0A1W2PQM1 296 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 FAM221BA6H8Z2 402 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 C2orf74A8MZ97 194 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 TMEM114B3SHH9 223 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 TCP11X1B4DZS4 312 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 CAPN5O15484 640 aaPredicted RBP8.99□□□□□ -0.97
DDX55-208ENST00000541259 KIF1CO43896 1103 aaKnown RBP8.99□□□□□ -0.97
DDX55-208ENST00000541259 NRP2O60462 931 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 PRAMEF10O60809 474 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 SNNO75324 88 aaPredicted RBP8.99□□□□□ -0.97
DDX55-208ENST00000541259 H2AFYO75367 372 aaKnown RBP8.99□□□□□ -0.97
DDX55-208ENST00000541259 OR4F21O95013 312 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 PVRP15151 417 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 PNLIPP16233 465 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 CD22P20273 847 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 CCND1P24385 295 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 GRK2P25098 689 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 MPSTP25325 297 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 CSF2RBP32927 897 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 CAPZBP47756 277 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 DUSP3P51452 185 aaPredicted RBP8.99□□□□□ -0.97
DDX55-208ENST00000541259 GFERP55789 205 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 ERVPABLB-1P60509 514 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 MEF2AQ02078 507 aaPredicted RBP8.99□□□□□ -0.97
DDX55-208ENST00000541259 PRDX1Q06830 199 aaKnown RBP8.99□□□□□ -0.97
DDX55-208ENST00000541259 TRAF3Q13114 568 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 CHIT1Q13231 466 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 KIR2DS3Q14952 304 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 SF1Q15637 639 aaKnown RBP8.99□□□□□ -0.97
DDX55-208ENST00000541259 INAVAQ3KP66 663 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 ATG16L1Q676U5 607 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 ARMC6Q6NXE6 501 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 IRGCQ6NXR0 463 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 METTL2BQ6P1Q9 378 aaKnown RBP8.99□□□□□ -0.97
DDX55-208ENST00000541259 SPESP1Q6UW49 350 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 SLCO4C1Q6ZQN7 724 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 FAM92BQ6ZTR7 304 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 PIP4P1Q86T03 277 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 OOSP2Q86WS3 158 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 TRIM42Q8IWZ5 723 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 KIAA2013Q8IYS2 634 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 OR2L3Q8NG85 312 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 OR4F6Q8NGB9 312 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 LRRC8CQ8TDW0 803 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 AGAP11Q8TF27 550 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 SLC5A11Q8WWX8 675 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 AHCYL2Q96HN2 611 aaKnown RBP8.99□□□□□ -0.97
DDX55-208ENST00000541259 TGM7Q96PF1 710 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 KCNA7Q96RP8 456 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 SORT1Q99523 831 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 SPNS1Q9H2V7 528 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 SLC6A20Q9NP91 592 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 MID1IP1Q9NPA3 183 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 SLCO1B3Q9NPD5 702 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 RNF11Q9Y3C5 154 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 DYRK1BQ9Y463 629 aa8.99□□□□□ -0.97
DDX55-208ENST00000541259 TMEM233B4DJY2 109 aa8.98□□□□□ -0.97
DDX55-208ENST00000541259 H7BY64 318 aa8.98□□□□□ -0.97
DDX55-208ENST00000541259 KLF11O14901 512 aa8.98□□□□□ -0.97
DDX55-208ENST00000541259 CLGNO14967 610 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms