RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 KLC3Q6P597 504 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 RPS27LQ71UM5 84 aaKnown RBP12.49□□□□□ -0.41
CCDC42-202ENST00000539522 PAQR7Q86WK9 346 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 TRIM42Q8IWZ5 723 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 GALNT15Q8N3T1 639 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 DNAJC22Q8N4W6 341 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 RNF31Q96EP0 1072 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 MED8Q96G25 268 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 HIST1H2AHQ96KK5 128 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 HIST1H2AJQ99878 128 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 H2AFJQ9BTM1 129 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 MLXIPLQ9NP71 852 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 ABCF3Q9NUQ8 709 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 LNPEPQ9UIQ6 1025 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 PILRAQ9UKJ1 303 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 SLC22A14Q9Y267 594 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 LOXL2Q9Y4K0 774 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 PCDHB11Q9Y5F2 797 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 FER1L5A0AVI2 2057 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 SDK2Q58EX2 2172 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 A0A1B0GTL3 188 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 CCDC189A1A4V9 331 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 A8MT66 165 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 SUPT3HB4E1H0 165 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 C9orf172C9J069 976 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 HGSO14964 777 aaPredicted RBP12.48□□□□□ -0.41
CCDC42-202ENST00000539522 ZW10O43264 779 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 PLIN3O60664 434 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 SUPT3HO75486 399 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 RASSF9O75901 435 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 RBP1P09455 135 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 CD22P20273 847 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 CDH3P22223 829 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 SERPINB4P48594 390 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 SHC2P98077 582 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 PRKAA1Q13131 559 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 SF1Q15637 639 aaKnown RBP12.48□□□□□ -0.41
CCDC42-202ENST00000539522 GPR19Q15760 415 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 C3orf38Q5JPI3 329 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 CATSPEREQ5SY80 951 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 PRAMEF13Q5VWM6 474 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 SULT1C3Q6IMI6 304 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 FBXO42Q6P3S6 717 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 LCTLQ6UWM7 567 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 ATG14Q6ZNE5 492 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 FRA10AC1Q70Z53 315 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 RAB11FIP2Q7L804 512 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 THOC6Q86W42 341 aaKnown RBP12.48□□□□□ -0.41
CCDC42-202ENST00000539522 NUDCD3Q8IVD9 361 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 CARFQ8N187 725 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 C19orf47Q8N9M1 422 aaKnown RBP12.48□□□□□ -0.41
CCDC42-202ENST00000539522 ARMC2Q8NEN0 867 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 RDH11Q8TC12 318 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 NEIL2Q969S2 332 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 MRPL57Q9BQC6 102 aaKnown RBP12.48□□□□□ -0.41
CCDC42-202ENST00000539522 DPH7Q9BTV6 452 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 CD244Q9BZW8 370 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 EPN3Q9H201 632 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 MRPL46Q9H2W6 279 aaKnown RBP12.48□□□□□ -0.41
CCDC42-202ENST00000539522 ASCL3Q9NQ33 180 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 CCDC177Q9NQR7 707 aaPredicted RBP12.48□□□□□ -0.41
CCDC42-202ENST00000539522 MID2Q9UJV3 735 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 NEUROG3Q9Y4Z2 214 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 DMXL2Q8TDJ6 3036 aa12.48□□□□□ -0.41
CCDC42-202ENST00000539522 CCDC187A0A096LP49 1063 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 EFCAB7A8K855 629 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 E7EQ34 232 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 E2F3O00716 465 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 PPP6CO00743 305 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 HAT1O14929 419 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 KDM1AO60341 852 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 MED26O95402 600 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 ZBTB11O95625 1053 aaPredicted RBP12.47□□□□□ -0.41
CCDC42-202ENST00000539522 BPGMP07738 259 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 NEFHP12036 1026 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 CDH1P12830 882 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 CPA3P15088 417 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 GCGRP47871 477 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 PPM1FP49593 454 aaPredicted RBP12.47□□□□□ -0.41
CCDC42-202ENST00000539522 HNMTP50135 292 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 CSNK1G2P78368 415 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 HSD11B2P80365 405 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 MC2RQ01718 297 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 TSTA3Q13630 321 aaPredicted RBP12.47□□□□□ -0.41
CCDC42-202ENST00000539522 E2F2Q14209 437 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 RTP5Q14D33 572 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 TERF2Q15554 542 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 PDK4Q16654 411 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 PFKFB4Q16877 469 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 DEFB110Q30KQ9 67 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 PRAMEF17Q5VTA0 474 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 CES4AQ5XG92 561 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 FRMPD2BQ6IN97 320 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 ARMC6Q6NXE6 501 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 FIGLAQ6QHK4 219 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 RGS9BPQ6ZS82 235 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 FAM129CQ86XR2 697 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 PLD3Q8IV08 490 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 PTGR2Q8N8N7 351 aaPredicted RBP12.47□□□□□ -0.41
CCDC42-202ENST00000539522 CCDC63Q8NA47 563 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms