RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 TAC4Q86UU9 113 aa10.4□□□□□ -0.74
CLIP1-209ENST00000537178 CHERPQ8IWX8 916 aaKnown RBP10.4□□□□□ -0.74
CLIP1-209ENST00000537178 LGI4Q8N135 537 aa10.4□□□□□ -0.74
CLIP1-209ENST00000537178 CLIP4Q8N3C7 705 aa10.4□□□□□ -0.74
CLIP1-209ENST00000537178 SLC44A3Q8N4M1 653 aa10.4□□□□□ -0.74
CLIP1-209ENST00000537178 FAM156AQ8NDB6 213 aa10.4□□□□□ -0.74
CLIP1-209ENST00000537178 DPAGT1Q9H3H5 408 aa10.4□□□□□ -0.74
CLIP1-209ENST00000537178 POLMQ9NP87 494 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-209ENST00000537178 FLRT1Q9NZU1 646 aa10.4□□□□□ -0.74
CLIP1-209ENST00000537178 DNAJB4Q9UDY4 337 aa10.4□□□□□ -0.74
CLIP1-209ENST00000537178 MT-CYBP00156 380 aaPredicted RBP10.4□□□□□ -0.75
CLIP1-209ENST00000537178 STOMP27105 288 aa10.4□□□□□ -0.75
CLIP1-209ENST00000537178 SLC6A9P48067 706 aa10.4□□□□□ -0.75
CLIP1-209ENST00000537178 DGKGP49619 791 aa10.4□□□□□ -0.75
CLIP1-209ENST00000537178 RFTN1Q14699 578 aaPredicted RBP10.4□□□□□ -0.75
CLIP1-209ENST00000537178 DEFB115Q30KQ5 88 aa10.4□□□□□ -0.75
CLIP1-209ENST00000537178 ANKRD22Q5VYY1 191 aa10.4□□□□□ -0.75
CLIP1-209ENST00000537178 ZNF366Q8N895 744 aa10.4□□□□□ -0.75
CLIP1-209ENST00000537178 ZSCAN4Q8NAM6 433 aaPredicted RBP10.4□□□□□ -0.75
CLIP1-209ENST00000537178 KLHL6Q8WZ60 621 aa10.4□□□□□ -0.75
CLIP1-209ENST00000537178 MTERF1Q99551 399 aaKnown RBP10.4□□□□□ -0.75
CLIP1-209ENST00000537178 TOR3AQ9H497 397 aa10.4□□□□□ -0.75
CLIP1-209ENST00000537178 CTPS2Q9NRF8 586 aa10.4□□□□□ -0.75
CLIP1-209ENST00000537178 ABCD2Q9UBJ2 740 aa10.4□□□□□ -0.75
CLIP1-209ENST00000537178 PADI3Q9ULW8 664 aa10.4□□□□□ -0.75
CLIP1-209ENST00000537178 WASF3Q9UPY6 502 aa10.4□□□□□ -0.75
CLIP1-209ENST00000537178 SNAPC5O75971 98 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 HLA-DPB1P04440 258 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 PTPN2P17706 415 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 SLC10A7Q0GE19 358 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 TUBA3CQ13748 450 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 USF2Q15853 346 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-209ENST00000537178 ARSHQ5FYA8 562 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 FUT10Q6P4F1 479 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 CMTR2Q8IYT2 770 aaKnown RBP10.39□□□□□ -0.75
CLIP1-209ENST00000537178 PROKR2Q8NFJ6 384 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 THRSPQ92748 146 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 TRIM43Q96BQ3 446 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-209ENST00000537178 SLC25A36Q96CQ1 311 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 TBX5Q99593 518 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 GPR20Q99678 358 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 FUZQ9BT04 418 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 C12orf65Q9H3J6 166 aaKnown RBP10.39□□□□□ -0.75
CLIP1-209ENST00000537178 XKR8Q9H6D3 395 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 AMBNQ9NP70 447 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 UCKL1Q9NWZ5 548 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 P2RX2Q9UBL9 471 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 POFUT2Q9Y2G5 429 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 FCF1Q9Y324 198 aaKnown RBP10.39□□□□□ -0.75
CLIP1-209ENST00000537178 SNX10Q9Y5X0 201 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 CLCA3PQ9Y6N3 262 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 TAF1LQ8IZX4 1826 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 E7EQ34 232 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 CSN2P05814 226 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 VAMP1P23763 118 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 GLP1RP43220 463 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 MAD2L1BPQ15013 274 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-209ENST00000537178 NPTX1Q15818 432 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 ASB18Q6ZVZ8 466 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 C1orf127Q8N9H9 656 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 GEMIN6Q8WXD5 167 aaKnown RBP10.39□□□□□ -0.75
CLIP1-209ENST00000537178 UCK2Q9BZX2 261 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 EBF3Q9H4W6 596 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 PCDHB16Q9NRJ7 776 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 TAS2R1Q9NYW7 299 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 STXBP5LQ9Y2K9 1186 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 CPQQ9Y646 472 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 M0R036 132 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 TLR4O00206 839 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 GNB5O14775 395 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 LHCGRP22888 699 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 GRIA1P42261 906 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 DSTNP60981 165 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 RAB12Q6IQ22 244 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 ANKRD26P1Q6NSI1 321 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 ZNF565Q8N9K5 539 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 WFIKKN2Q8TEU8 576 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 GAS2L1Q99501 681 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-209ENST00000537178 OSBPL7Q9BZF2 842 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 DCSTAMPQ9H295 470 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 TRIM36Q9NQ86 728 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 SDHAF3Q9NRP4 125 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 IRS2Q9Y4H2 1338 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 FXYD6-FXYD2A0A087WZ82 144 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 OR6C70A6NIJ9 312 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 ENPP3O14638 875 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 NOL4O94818 638 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 H1F0P07305 194 aaKnown RBP10.39□□□□□ -0.75
CLIP1-209ENST00000537178 MYCLP1P12525 358 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-209ENST00000537178 NPR2P20594 1047 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 HSD11B1P28845 292 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 SLC15A1P46059 708 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 CCR8P51685 355 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 PHC1P78364 1004 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 ARL9Q6T311 187 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 BANPQ8N9N5 519 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 TLCD1Q96CP7 247 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 FXYD6Q9H0Q3 95 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 ST6GALNAC4Q9H4F1 302 aa10.39□□□□□ -0.75
CLIP1-209ENST00000537178 VPS29Q9UBQ0 182 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms