RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 KCTD9Q7L273 389 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 SNX29P2Q8IUI4 249 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF584Q8IVC4 421 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 OR7G1Q8NGA0 311 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 LILRB4Q8NHJ6 448 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 LGALS12Q96DT0 336 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 MED30Q96HR3 178 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF317Q96PQ6 595 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 P2RX2Q9UBL9 471 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF225Q9UK10 706 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNRF3Q9ULT6 936 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 LACTBL1A8MY62 500 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 CETPP11597 493 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 MMP8P22894 467 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ARSFP54793 590 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 TAS2R50P59544 299 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 SEMA5AQ13591 1074 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 C10orf62Q5T681 223 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 C1orf94Q6P1W5 598 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 CADM2Q8N3J6 435 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ESX1Q8N693 406 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 BORCS7Q96B45 105 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 PKP2Q99959 881 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 FDXACB1Q9BRP7 624 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC5A7Q9GZV3 580 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 PXMP2Q9NR77 195 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 DERAQ9Y315 318 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 C20orf202A1L168 122 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 INPPL1O15357 1258 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 IL7RP16871 459 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 MARCKSL1P49006 195 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 TAGLNQ01995 201 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 MLLT1Q03111 559 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF155Q12901 538 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 SCGB2A2Q13296 93 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 PTPN20Q4JDL3 420 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 DCST2Q5T1A1 773 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 RAET1GQ6H3X3 334 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 ARHGAP11AQ6P4F7 1023 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 PAPD4Q6PIY7 484 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 PEX13Q92968 403 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 TXN2Q99757 166 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 ADAM2Q99965 735 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 PNO1Q9NRX1 252 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 OR6C65A6NJZ3 312 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 TNFRSF10BO14763 440 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 SBK2P0C263 348 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF169Q14929 603 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 NTRK2Q16620 822 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 C6orf141Q5SZD1 244 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 NDUFAF5Q5TEU4 345 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC22A25Q6T423 547 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 SIMC1Q8NDZ2 872 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 REPS2Q8NFH8 660 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC22A17Q8WUG5 538 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 C7orf34Q96L11 122 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 DHRS1Q96LJ7 313 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 PELOQ9BRX2 385 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 RAB11FIP5Q9BXF6 653 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 PRRG4Q9BZD6 226 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 TMEM39BQ9GZU3 492 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 SOHLH2Q9NX45 425 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 GSKIPQ9P0R6 139 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 ATG4BQ9Y4P1 393 aa10.96□□□□□ -0.65
LIMCH1-217ENST00000512946 CSDE1O75534 798 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 OXSR1O95747 527 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 MT-ND1P03886 318 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 FCER2P06734 321 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 ERCC1P07992 297 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 HTR1AP08908 422 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 DDX6P26196 483 aaKnown RBP eCLIP10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 RPIAP49247 311 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 TAS2R40P59535 323 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 TAS2R31P59538 309 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 NAE1Q13564 534 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 GAS6Q14393 721 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 ATP6AP1Q15904 470 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 RAVER1Q8IY67 606 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 OR56B2PQ8NGI1 322 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 CACNG6Q9BXT2 260 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 SLC25A51Q9H1U9 297 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 TMEM100Q9NV29 134 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 OXSMQ9NWU1 459 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 ZNF821O75541 412 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 PSEN2P49810 448 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 GSK3BP49841 420 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 HNRNPA0Q13151 305 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 CHIT1Q13231 466 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 ZNF550Q7Z398 422 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 PHTF2Q8N3S3 785 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 FTMTQ8N4E7 242 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 SLC7A13Q8TCU3 470 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 ZNF675Q8TD23 568 aa10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 UPF1Q92900 1129 aaKnown RBP eCLIP10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 FAM120CQ9NX05 1096 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-217ENST00000512946 TRAV6A0A075B6T7 132 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 A0A1W2PP18 115 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 ANKRD33BA6NCL7 494 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 OR2AG2A6NM03 316 aa10.95□□□□□ -0.66
LIMCH1-217ENST00000512946 PI15O43692 258 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms