RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 LIPAP38571 399 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 MAGEA2P43356 314 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 PRSS36Q5K4E3 855 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 ZSWIM9Q86XI8 627 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 NXPE1Q8N323 547 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 OR52J3Q8NH60 311 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 DSN1Q9H410 356 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 ZBTB20Q9HC78 741 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 MAN2B2Q9Y2E5 1009 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 BTBD3Q9Y2F9 522 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 AP3M1Q9Y2T2 418 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 TSC22D4Q9Y3Q8 395 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 PCDHB7Q9Y5E2 793 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 GPC6Q9Y625 555 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 WBP4O75554 376 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 PRKAR2AP13861 404 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 IDH2P48735 452 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 CYP4F2P78329 520 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 PRKCZQ05513 592 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 NPRL3Q12980 569 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 INO80DQ53TQ3 878 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 KIAA1614Q5VZ46 1190 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 ANGPTL8Q6UXH0 198 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 PLEKHG7Q6ZR37 379 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 IFNL1Q8IU54 200 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 VRK3Q8IV63 474 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 FBLIM1Q8WUP2 373 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 ZNF566Q969W8 418 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 RNF167Q9H6Y7 350 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 TMEM161AQ9NX61 479 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 NDRG4Q9ULP0 352 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 SNX6Q9UNH7 406 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 WDR37Q9Y2I8 494 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 LAMA3Q16787 3333 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 YY2O15391 372 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 EPN2O95208 641 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 OPN1SWP03999 348 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 GALTP07902 379 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 HIST1H2AGP0C0S8 130 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 COX7A2P14406 83 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 HMGA1P17096 107 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 JUNDP17535 347 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 HIST1H2ADP20671 130 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 RPS3P23396 243 aaKnown RBP eCLIP8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 HOXD12P35452 270 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 RPS3AP61247 264 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 CHIT1Q13231 466 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 ATP13A5Q4VNC0 1218 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 CAPN13Q6MZZ7 669 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 CHST9Q7L1S5 443 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 SVOPQ8N4V2 548 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 POC5Q8NA72 575 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 UPF1Q92900 1129 aaKnown RBP eCLIP8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 ITPKCQ96DU7 683 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 HIST1H2AHQ96KK5 128 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 HIST1H2AJQ99878 128 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 COPS4Q9BT78 406 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 H2AFJQ9BTM1 129 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 TTLL2Q9BWV7 592 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 POU2F3Q9UKI9 436 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 TESMINQ9Y4I5 508 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 ABCB1P08183 1280 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 LAMP1P11279 417 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 GTF2E2P29084 291 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 FAM26DQ5JW98 314 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 KIAA1841Q6NSI8 718 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 SERPINA13PQ6UXR4 307 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 TSPYL5Q86VY4 417 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 RHOXF1Q8NHV9 184 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 SPPL2AQ8TCT8 520 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 BTBD2Q9BX70 525 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 SCHIP1Q9P0W5 487 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 CD84Q9UIB8 345 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 LRFN2Q9ULH4 789 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 CLEC4EQ9ULY5 219 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 ANKRD36A6QL64 1941 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 TRPM7Q96QT4 1865 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 NPIPB15A6NHN6 443 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 TBKBP1A7MCY6 615 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 M0R129 80 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 AIREO43918 545 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 GSTT2P0CG29 244 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 GSTT2BP0CG30 244 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 SERPINB1P30740 379 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 SPAM1P38567 509 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 MTA1Q13330 715 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 UGT8Q16880 541 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 CYP27C1Q4G0S4 372 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 MACC1Q6ZN28 852 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 CYP2U1Q7Z449 544 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 PTOV1Q86YD1 416 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 ZZZ3Q8IYH5 903 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 NELL1Q92832 810 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 COPS8Q99627 209 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 HTATIP2Q9BUP3 242 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 SLC29A3Q9BZD2 475 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 ROGDIQ9GZN7 287 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 FBXO8Q9NRD0 319 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 TMEM184CQ9NVA4 438 aa8.97□□□□□ -0.97
LIMCH1-215ENST00000512632 KCTD5Q9NXV2 234 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms