RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 KCNC1P48547 511 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 HNMTP50135 292 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 INHBCP55103 352 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 TBPL1P62380 186 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 TAP2Q03519 686 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 SLC18A2Q05940 514 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 NAE1Q13564 534 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 CDKL4Q5MAI5 379 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 THEMIS2Q5TEJ8 643 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 CACHD1Q5VU97 1274 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 SULT1C3Q6IMI6 304 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 C16orf46Q6P387 395 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 INO80CQ6PI98 192 aaPredicted RBP9.67□□□□□ -0.86
NUP54-203ENST00000504173 SPESP1Q6UW49 350 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 SUSD1Q6UWL2 747 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 SH2D5Q6ZV89 423 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 EXD3Q8N9H8 876 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 PDPRQ8NCN5 879 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 RHBDF1Q96CC6 855 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 PGM2Q96G03 612 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 APOPT1Q96IL0 206 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 OR2A14Q96R47 310 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 MAP3K3Q99759 626 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 DPH1Q9BZG8 443 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 IQCGQ9H095 443 aaKnown RBP9.67□□□□□ -0.86
NUP54-203ENST00000504173 MRPL46Q9H2W6 279 aaKnown RBP9.67□□□□□ -0.86
NUP54-203ENST00000504173 SEMA6CQ9H3T2 930 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 VIPAS39Q9H9C1 493 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 TMEM216Q9P0N5 145 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 PCDHB11Q9Y5F2 797 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 A0A0J9YY10 115 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 A0A1W2PPV9 198 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 TLCD2A6NGC4 264 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 TMX2-CTNND1H3BSU7 103 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 KIF1CO43896 1103 aaKnown RBP9.66□□□□□ -0.86
NUP54-203ENST00000504173 CCNDBP1O95273 360 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 FKBP9O95302 570 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 TAC1P20366 129 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 CCND1P24385 295 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 PSMB5P28074 263 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 CMPK1P30085 196 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 CCKBRP32239 447 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 PDX1P52945 283 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 ZFP36L1Q07352 338 aaKnown RBP9.66□□□□□ -0.86
NUP54-203ENST00000504173 TRA2AQ13595 282 aaKnown RBP eCLIP9.66□□□□□ -0.86
NUP54-203ENST00000504173 SF1Q15637 639 aaKnown RBP9.66□□□□□ -0.86
NUP54-203ENST00000504173 SLC5A12Q1EHB4 618 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 ISXQ2M1V0 245 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 C18orf21Q32NC0 220 aaPredicted RBP9.66□□□□□ -0.86
NUP54-203ENST00000504173 PRAMEF13Q5VWM6 474 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 CAPN13Q6MZZ7 669 aaPredicted RBP9.66□□□□□ -0.86
NUP54-203ENST00000504173 CDHR3Q6ZTQ4 885 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 PRSS42Q7Z5A4 293 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 B3GNT8Q7Z7M8 397 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 TRIM73Q86UV7 250 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 SLITRK4Q8IW52 837 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 LRRC56Q8IYG6 542 aaPredicted RBP9.66□□□□□ -0.86
NUP54-203ENST00000504173 FBXO39Q8N4B4 442 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 GOLGA6L1Q8N7Z2 621 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 RCBTB1Q8NDN9 531 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 OR56A3Q8NH54 315 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 PYCR2Q96C36 320 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 PPM1MQ96MI6 270 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 ACAT2Q9BWD1 397 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 STRADBQ9C0K7 418 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 TWSG1Q9GZX9 223 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 PCBD2Q9H0N5 130 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 ACBD3Q9H3P7 528 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 CNOT10Q9H9A5 744 aaKnown RBP9.66□□□□□ -0.86
NUP54-203ENST00000504173 TMBIM4Q9HC24 238 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 C1GALT1Q9NS00 363 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 MKS1Q9NXB0 559 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 AKAP7Q9P0M2 348 aaPredicted RBP9.66□□□□□ -0.86
NUP54-203ENST00000504173 PDP2Q9P2J9 529 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 TAC3Q9UHF0 121 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 GRID1Q9ULK0 1009 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 TMCO1Q9UM00 188 aa9.66□□□□□ -0.86
NUP54-203ENST00000504173 NBASA2RRP1 2371 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 ICE1Q9Y2F5 2266 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 AGPSO00116 658 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 AGRPO00253 132 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 MAP2K7O14733 419 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 TOX3O15405 576 aaPredicted RBP9.65□□□□□ -0.86
NUP54-203ENST00000504173 TAPBPO15533 448 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 PRICKLE3O43900 615 aaPredicted RBP9.65□□□□□ -0.86
NUP54-203ENST00000504173 SPAG7O75391 227 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 DXOO77932 396 aaKnown RBP9.65□□□□□ -0.86
NUP54-203ENST00000504173 IPO13O94829 963 aaKnown RBP9.65□□□□□ -0.86
NUP54-203ENST00000504173 WDR47O94967 919 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 ANKRD34CP0C6C1 535 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 MTHFD2P13995 350 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 PVRP15151 417 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 CREB1P16220 341 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 LSSP48449 732 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 HSPA7P48741 367 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 ARL4DP49703 201 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 SEPHS1P49903 392 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 ALDH18A1P54886 795 aaKnown RBP9.65□□□□□ -0.86
NUP54-203ENST00000504173 ABATP80404 500 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 TLE1Q04724 770 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms