RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 LRRC38Q5VT99 294 aa15.62■□□□□ 0.09
VIM-208ENST00000497849 TUBA3EQ6PEY2 450 aa15.62■□□□□ 0.09
VIM-208ENST00000497849 TMEM205Q6UW68 189 aa15.62■□□□□ 0.09
VIM-208ENST00000497849 FGD2Q7Z6J4 655 aa15.62■□□□□ 0.09
VIM-208ENST00000497849 DMRTC2Q8IXT2 367 aaPredicted RBP15.62■□□□□ 0.09
VIM-208ENST00000497849 BEST3Q8N1M1 668 aa15.62■□□□□ 0.09
VIM-208ENST00000497849 OR2L8Q8NGY9 312 aa15.62■□□□□ 0.09
VIM-208ENST00000497849 SCMH1Q96GD3 660 aa15.62■□□□□ 0.09
VIM-208ENST00000497849 C10orf88Q9H8K7 445 aa15.62■□□□□ 0.09
VIM-208ENST00000497849 CCM2LQ9NUG4 571 aaPredicted RBP15.62■□□□□ 0.09
VIM-208ENST00000497849 COQ3Q9NZJ6 369 aa15.62■□□□□ 0.09
VIM-208ENST00000497849 TRPC4Q9UBN4 977 aa15.62■□□□□ 0.09
VIM-208ENST00000497849 TEKT2Q9UIF3 430 aa15.62■□□□□ 0.09
VIM-208ENST00000497849 A8MUI8 341 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 FOXO6A8MYZ6 492 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 NRDCO43847 1150 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 FTH1P02794 183 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 HEXBP07686 556 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 ST13P50502 369 aaKnown RBP15.61■□□□□ 0.09
VIM-208ENST00000497849 AP2B1P63010 937 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 DSG2Q14126 1118 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 MUM1Q2TAK8 710 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 SYTL3Q4VX76 610 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 KAZNQ674X7 775 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 FCRLBQ6BAA4 426 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 VRK3Q8IV63 474 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 GHDCQ8N2G8 530 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 MARVELD2Q8N4S9 558 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 AMER3Q8N944 861 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 P3H4Q92791 437 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 HAUS1Q96CS2 278 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 ZNF559Q9BR84 538 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 TUBB6Q9BUF5 446 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 C14orf105Q9NVL8 296 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 ANKRD10Q9NXR5 420 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 DUSP10Q9Y6W6 482 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 FAM169AQ9Y6X4 670 aa15.61■□□□□ 0.09
VIM-208ENST00000497849 NKX2-6A6NCS4 301 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 QSOX1O00391 747 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 TSPAN12O95859 305 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 EIF2S1P05198 315 aaKnown RBP15.6■□□□□ 0.09
VIM-208ENST00000497849 TNNT1P13805 278 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 PSMB5P28074 263 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 EEF1DP29692 281 aaKnown RBP15.6■□□□□ 0.09
VIM-208ENST00000497849 CD96P40200 585 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 CSE1LP55060 971 aaKnown RBP15.6■□□□□ 0.09
VIM-208ENST00000497849 PLOD1Q02809 727 aaPredicted RBP15.6■□□□□ 0.09
VIM-208ENST00000497849 PRTGQ2VWP7 1150 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 ODF2Q5BJF6 829 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 DNAJC21Q5F1R6 531 aaKnown RBP15.6■□□□□ 0.09
VIM-208ENST00000497849 ACER2Q5QJU3 275 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 SPINK14Q6IE38 97 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 H3F3CQ6NXT2 135 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 RNF44Q7L0R7 432 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 SLC22A15Q8IZD6 547 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 SLC35G2Q8TBE7 412 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 NINJ1Q92982 152 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 CDKN2AIPNLQ96HQ2 116 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 NPAS2Q99743 824 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 YIPF2Q9BWQ6 316 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 UCK2Q9BZX2 261 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 TGIF2Q9GZN2 237 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 LACRTQ9GZZ8 138 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 NLE1Q9NVX2 485 aaPredicted RBP15.6■□□□□ 0.09
VIM-208ENST00000497849 DDX56Q9NY93 547 aaKnown RBP15.6■□□□□ 0.09
VIM-208ENST00000497849 HYOU1Q9Y4L1 999 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 KLK4Q9Y5K2 254 aa15.6■□□□□ 0.09
VIM-208ENST00000497849 PRRG2O14669 202 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 RASGRF2O14827 1237 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 TOXO94900 526 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 FKBP9O95302 570 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 PSMB4P28070 264 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 MSX1P28360 303 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 RBL1P28749 1068 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 SLC26A3P40879 764 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 ITIH4Q14624 930 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 OR1C1Q15619 314 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 RNFT1Q5M7Z0 435 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 PACS1Q6VY07 963 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 GALNTL5Q7Z4T8 443 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 KIAA1328Q86T90 577 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 DCUN1D3Q8IWE4 304 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 SYNPO2LQ9H987 977 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 ARNT2Q9HBZ2 717 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 KCNN3Q9UGI6 736 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 INTUQ9ULD6 942 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 AAR2Q9Y312 384 aaKnown RBP15.59■□□□□ 0.09
VIM-208ENST00000497849 HRH3Q9Y5N1 445 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.59■□□□□ 0.091e-22■■□□□ 12.7
VIM-208ENST00000497849 JMJD1CQ15652 2540 aa15.59■□□□□ 0.09
VIM-208ENST00000497849 IGHV3-20A0A0C4DH32 117 aa15.58■□□□□ 0.08
VIM-208ENST00000497849 HACD1B0YJ81 288 aa15.58■□□□□ 0.08
VIM-208ENST00000497849 MAN1A2O60476 641 aa15.58■□□□□ 0.08
VIM-208ENST00000497849 SEC24DO94855 1032 aaPredicted RBP15.58■□□□□ 0.08
VIM-208ENST00000497849 IPO7O95373 1038 aaKnown RBP15.58■□□□□ 0.08
VIM-208ENST00000497849 FOSL1P15407 271 aa15.58■□□□□ 0.08
VIM-208ENST00000497849 CCR7P32248 378 aa15.58■□□□□ 0.08
VIM-208ENST00000497849 YBX1P67809 324 aaKnown RBP15.58■□□□□ 0.08
VIM-208ENST00000497849 FOLH1Q04609 750 aa15.58■□□□□ 0.08
VIM-208ENST00000497849 FASTKQ14296 549 aaKnown RBP15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms