RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 TMEM65Q6PI78 240 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 INO80CQ6PI98 192 aaPredicted RBP6.4□□□□□ -1.38
VIM-207ENST00000495528 LINGO4Q6UY18 593 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 H2AFVQ71UI9 128 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 ERN2Q76MJ5 926 aaKnown RBP6.4□□□□□ -1.38
VIM-207ENST00000495528 EFL1Q7Z2Z2 1120 aaKnown RBP6.4□□□□□ -1.38
VIM-207ENST00000495528 KIAA1328Q86T90 577 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 PRIMA1Q86XR5 153 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 FAM71DQ8N9W8 422 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 C1orf131Q8NDD1 294 aaKnown RBP6.4□□□□□ -1.38
VIM-207ENST00000495528 ZNF548Q8NEK5 533 aaPredicted RBP6.4□□□□□ -1.38
VIM-207ENST00000495528 STYXQ8WUJ0 223 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 MED8Q96G25 268 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 PPP1R13BQ96KQ4 1090 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 SLC17A9Q9BYT1 436 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 ISCUQ9H1K1 167 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 CLMPQ9H6B4 373 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 DYRK4Q9NR20 520 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 TRMT1Q9NXH9 659 aaKnown RBP6.4□□□□□ -1.38
VIM-207ENST00000495528 ADAM22Q9P0K1 906 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 PTGFRNQ9P2B2 879 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 PYCARDQ9ULZ3 195 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 HS3ST2Q9Y278 367 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 DTNAQ9Y4J8 743 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 SNX10Q9Y5X0 201 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 COMMD10Q9Y6G5 202 aa6.4□□□□□ -1.38
VIM-207ENST00000495528 TP53BP1Q12888 1972 aaPredicted RBP6.4□□□□□ -1.39
VIM-207ENST00000495528 CFAP46Q8IYW2 2715 aa6.4□□□□□ -1.39
VIM-207ENST00000495528 A0A0U1RQJ8 604 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 SPTY2D1-AS1A0A0U1RR47 76 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 OR2W5A6NFC9 320 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 CDRT15L2A8MXV6 281 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 GOLGA8SH3BPF8 625 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 I6L893 689 aaPredicted RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 M0QYT0 321 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 AQP9O43315 295 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 ASNA1O43681 348 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 SLC28A2O43868 658 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 PRAMEF2O60811 474 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 ZNF821O75541 412 aaPredicted RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 IPO7O95373 1038 aaKnown RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 LCA5LO95447 670 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 LSM8O95777 96 aaKnown RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 RHOCP08134 193 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 CDH5P33151 784 aaPredicted RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 NSFP46459 744 aaKnown RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 SNX16P57768 344 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 RPS21P63220 83 aaKnown RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 PDE1CQ14123 709 aaPredicted RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 PFKFB4Q16877 469 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 DEFB133Q30KQ1 61 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 OTUD1Q5VV17 481 aaPredicted RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 KYAT3Q6YP21 454 aaKnown RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 FAM183BPQ6ZVS7 135 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 PTAR1Q7Z6K3 402 aaPredicted RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 PHF13Q86YI8 300 aaPredicted RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 ZNF683Q8IZ20 524 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 MCOLN2Q8IZK6 566 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 EXD3Q8N9H8 876 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 ATG16L2Q8NAA4 619 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 LMX1AQ8TE12 382 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 FEM1CQ96JP0 617 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 CCDC114Q96M63 670 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 CPXM1Q96SM3 734 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 KLF6Q99612 283 aaPredicted RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 C11orf70Q9BRQ4 267 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 TKTL2Q9H0I9 626 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 TCEAL2Q9H3H9 227 aaPredicted RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 SYNCQ9H7C4 482 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 ASNSD1Q9NWL6 643 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 IL36AQ9UHA7 158 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 IPO11Q9UI26 975 aaKnown RBP6.39□□□□□ -1.39
VIM-207ENST00000495528 PPP2R2CQ9Y2T4 447 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 FADS3Q9Y5Q0 445 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 CSNK1G3Q9Y6M4 447 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 COL6A6A6NMZ7 2263 aa6.39□□□□□ -1.39
VIM-207ENST00000495528 TCRBV5S1A1TA0A578 114 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 IGLON5A6NGN9 336 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 FPGTO14772 594 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 PCDH17O14917 1159 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 ZSCAN12O43309 604 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 HSF2BPO75031 334 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 TNFSF15O95150 251 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 CCDC175P0C221 793 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 TMIGD3P0DMS9 266 aaPredicted RBP6.38□□□□□ -1.39
VIM-207ENST00000495528 ADRB3P13945 408 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 MMP8P22894 467 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 AKT1P31749 480 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 GALNSP34059 522 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 RABIFP47224 123 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 GABRB2P47870 512 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 DGKQP52824 942 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 PDX1P52945 283 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 NAP1L1P55209 391 aaKnown RBP6.38□□□□□ -1.39
VIM-207ENST00000495528 PFN3P60673 137 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 KIF5AQ12840 1032 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 PTP4A2Q12974 167 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 C1orf61Q13536 156 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 SPARCL1Q14515 664 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 MFSD13AQ14CX5 517 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms