RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 ZNF542PQ5EBM4 170 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 AGBL2Q5U5Z8 902 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 UGT3A1Q6NUS8 523 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 LVRNQ6Q4G3 990 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 CYS1Q717R9 158 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 TRMT10CQ7L0Y3 403 aaKnown RBP6.04□□□□□ -1.44
SF3B1-209ENST00000479532 DET1Q7L5Y6 550 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 TAOK1Q7L7X3 1001 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 CHST15Q7LFX5 561 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-209ENST00000479532 AMZ2Q86W34 360 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 SLC26A11Q86WA9 606 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 CTAGE3PQ8IX95 158 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 IQCF2Q8IXL9 164 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 IQCKQ8N0W5 287 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 Q8N1Y9 231 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 DCLK2Q8N568 766 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 CCDC63Q8NA47 563 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 ZBTB8BQ8NAP8 495 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-209ENST00000479532 AVL9Q8NBF6 648 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 ZNF548Q8NEK5 533 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-209ENST00000479532 PPP1R14CQ8TAE6 165 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 HM13Q8TCT9 377 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 OR1E3Q8WZA6 343 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 SLC35B4Q969S0 331 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 NAF1Q96HR8 494 aaKnown RBP6.04□□□□□ -1.44
SF3B1-209ENST00000479532 ATP6V1G3Q96LB4 118 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 C9orf72Q96LT7 481 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 ZNF570Q96NI8 536 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 CGREF1Q99674 301 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 ARPC5LQ9BPX5 153 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 CCDC77Q9BR77 488 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 TIMM29Q9BSF4 260 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 OSGEPL1Q9H4B0 414 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 STN1Q9H668 368 aaKnown RBP6.04□□□□□ -1.44
SF3B1-209ENST00000479532 CCDC134Q9H6E4 229 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 MRPL40Q9NQ50 206 aaKnown RBP6.04□□□□□ -1.44
SF3B1-209ENST00000479532 FSCN3Q9NQT6 498 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 NCKIPSDQ9NZQ3 722 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 FBXO5Q9UKT4 447 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.04□□□□□ -1.44
SF3B1-209ENST00000479532 IKBKGQ9Y6K9 419 aa6.04□□□□□ -1.44
SF3B1-209ENST00000479532 TDRD6O60522 2096 aaKnown RBP6.03□□□□□ -1.44
SF3B1-209ENST00000479532 IGLV3-16A0A075B6K0 115 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 C17orf113A0A1B0GUU1 675 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.03□□□□□ -1.44
SF3B1-209ENST00000479532 OR5K4A6NMS3 321 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 C22orf46C9J442 243 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 LMO7DNF2Z398 122 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 IFRD1O00458 451 aaPredicted RBP6.03□□□□□ -1.44
SF3B1-209ENST00000479532 TPP1O14773 563 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 SCAMP1O15126 338 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 SNX2O60749 519 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 SDC3O75056 442 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 VPS26AO75436 327 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 KATNA1O75449 491 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 POP7O75817 140 aaKnown RBP6.03□□□□□ -1.44
SF3B1-209ENST00000479532 FUCA1P04066 466 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 APOA4P06727 396 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 PRSS56P0CW18 603 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 ACP5P13686 325 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 PKMP14618 531 aaKnown RBP6.03□□□□□ -1.44
SF3B1-209ENST00000479532 CHRM3P20309 590 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 IDSP22304 550 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 RPS3P23396 243 aaKnown RBP eCLIP6.03□□□□□ -1.444e-6■■■■■ 40.5
SF3B1-209ENST00000479532 DGKAP23743 735 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 SSTR1P30872 391 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 FMO4P31512 558 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 PLA2G5P39877 138 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 ACTR1BP42025 376 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 HALP42357 657 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 SLC1A2P43004 574 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 GRK6P43250 576 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 DUSP3P51452 185 aaPredicted RBP6.03□□□□□ -1.44
SF3B1-209ENST00000479532 CLCNKAP51800 687 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 NEK2P51955 445 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 HK2P52789 917 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 LIMK1P53667 647 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 SLC12A2P55011 1212 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 ADARP55265 1226 aaKnown RBP6.03□□□□□ -1.44
SF3B1-209ENST00000479532 ACTR1AP61163 376 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 MXRA7P84157 204 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 BNC1Q01954 994 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 IFT88Q13099 833 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 CTBP1Q13363 440 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 C1orf61Q13536 156 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 SMAD1Q15797 465 aaKnown RBP6.03□□□□□ -1.44
SF3B1-209ENST00000479532 TTLL9Q3SXZ7 439 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 TPRG1LQ5T0D9 272 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 TEDDM1Q5T9Z0 273 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 FAM45BPQ6NSW5 357 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 GALNT7Q86SF2 657 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 IGDCC3Q8IVU1 814 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 CNTN4Q8IWV2 1026 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 PIANPQ8IYJ0 282 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 KIAA2013Q8IYS2 634 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 RASGEF1AQ8N9B8 481 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 OR2L2Q8NH16 312 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 FAM45AQ8TCE6 357 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 TRPC4APQ8TEL6 797 aa6.03□□□□□ -1.44
SF3B1-209ENST00000479532 SETD7Q8WTS6 366 aaKnown RBP6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms