RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 GPR19Q15760 415 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 FASTKD1Q53R41 847 aaKnown RBP6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 AARS2Q5JTZ9 985 aaKnown RBP6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 PWWP2BQ6NUJ5 590 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 MICALCLQ6ZW33 695 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 PRUNE1Q86TP1 453 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 AMIGO1Q86WK6 493 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 TMEM126BQ8IUX1 230 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 TBC1D21Q8IYX1 336 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 GLIS1Q8NBF1 620 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 OR52E1Q8NGJ3 308 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 OR6P1Q8NGX9 317 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 OR4L1Q8NH43 312 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 APOBEC4Q8WW27 367 aaKnown RBP6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 TFGQ92734 400 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 RNF31Q96EP0 1072 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 SGSM3Q96HU1 749 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 HGH1Q9BTY7 390 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 SLC25A18Q9H1K4 315 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 LHX9Q9NQ69 397 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 SLC2A6Q9UGQ3 507 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 POLG2Q9UHN1 485 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 ASF1AQ9Y294 204 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 BTRCQ9Y297 605 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 TCAF1Q9Y4C2 921 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 PCDHGA6Q9Y5G7 932 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 MRPS18BQ9Y676 258 aaKnown RBP6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 PRSS21Q9Y6M0 314 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 CCDC88CQ9P219 2028 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 SPTA1P02549 2419 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 BSNQ9UPA5 3926 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 FER1L5A0AVI2 2057 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 SLC5A10A0PJK1 596 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 PIPSLA2A3N6 862 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 SLC9B1P1A6NJY1 282 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 TMEM150CB9EJG8 249 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 BTN3A3O00478 584 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 CEP104O60308 925 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 OR1I1O60431 355 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 CREG1O75629 220 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 SCRG1O75711 98 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 RECKO95980 971 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 NTRK1P04629 796 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 KLK3P07288 261 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 ITGB6P18564 788 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 F8A1P23610 371 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 ACADLP28330 430 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 PRDX3P30048 256 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 CXCR5P32302 372 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 SHMT2P34897 504 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 TTPAP49638 278 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 ST13P50502 369 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 SESN2P58004 480 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 RPS15P62841 145 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 CCZ1BP86790 482 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 CCZ1P86791 482 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 CDK16Q00536 496 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 PRKG2Q13237 762 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 DNASE1L3Q13609 305 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 ERV3-1Q14264 604 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 BRD3Q15059 726 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 DEFB109BQ30KR1 87 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 DNAJC21Q5F1R6 531 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 PCID2Q5JVF3 399 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 ATP1A1-AS1Q5TC04 95 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 FBXO38Q6PIJ6 1188 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 SPESP1Q6UW49 350 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 HOOK3Q86VS8 718 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 ADGRF3Q8IZF5 1079 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 OR5AR1Q8NGP9 310 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 OR5K2Q8NHB8 316 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 CT55Q8WUE5 264 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 SEC14L1Q92503 715 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 CPT1BQ92523 772 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 ZNF501Q96CX3 271 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 PPM1MQ96MI6 270 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 ZNF778Q96MU6 729 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 LRFN5Q96NI6 719 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 TLR10Q9BXR5 811 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 GPR87Q9BY21 358 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 PITPNM3Q9BZ71 974 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 IL22Q9GZX6 179 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 XKR8Q9H6D3 395 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 SYTL2Q9HCH5 934 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 CHRAC1Q9NRG0 131 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 KCND1Q9NSA2 647 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 CATSPERZQ9NTU4 200 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 ACTR10Q9NZ32 417 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 BFARQ9NZS9 450 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 ANAPC5Q9UJX4 755 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 ICKQ9UPZ9 632 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 POLHQ9Y253 713 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 PPP2R2CQ9Y2T4 447 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 TDRKHQ9Y2W6 561 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 TLN1Q9Y490 2541 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 ANKRD12Q6UB98 2062 aa6.57□□□□□ -1.36
CCDC88A-213ENST00000476903 PRMT5O14744 637 aaPredicted RBP6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 CD3EAPO15446 510 aaKnown RBP6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 FSHBP01225 129 aa6.56□□□□□ -1.36
CCDC88A-213ENST00000476903 RPN2P04844 631 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms