RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 PRPF4O43172 522 aaKnown RBP eCLIP14.21□□□□□ -0.13
COL9A3-209ENST00000469852 CTSVO60911 334 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 IPO13O94829 963 aaKnown RBP14.21□□□□□ -0.13
COL9A3-209ENST00000469852 ZBTB11O95625 1053 aaPredicted RBP14.21□□□□□ -0.13
COL9A3-209ENST00000469852 CTSBP07858 339 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 EBLN1P0CF75 366 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 MYL2P10916 166 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 CCL4P13236 92 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 CPA3P15088 417 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 FOLR1P15328 257 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 NELFEP18615 380 aaKnown RBP14.21□□□□□ -0.13
COL9A3-209ENST00000469852 ATP5F1P24539 256 aaPredicted RBP14.21□□□□□ -0.13
COL9A3-209ENST00000469852 GABRA4P48169 554 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 TRA2AQ13595 282 aaKnown RBP eCLIP14.21□□□□□ -0.13
COL9A3-209ENST00000469852 DEFB110Q30KQ9 67 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 ZNF425Q6IV72 752 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 FIGLAQ6QHK4 219 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 PAQR7Q86WK9 346 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 PLD3Q8IV08 490 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 CCDC63Q8NA47 563 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 PMEPA1Q969W9 287 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 PRR11Q96HE9 360 aaPredicted RBP14.21□□□□□ -0.13
COL9A3-209ENST00000469852 PRAP1Q96NZ9 151 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 FCRL4Q96PJ5 515 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 STMN4Q9H169 189 aaPredicted RBP14.21□□□□□ -0.13
COL9A3-209ENST00000469852 CNOT10Q9H9A5 744 aaKnown RBP14.21□□□□□ -0.13
COL9A3-209ENST00000469852 KCNK9Q9NPC2 374 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 SOHLH2Q9NX45 425 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 SIDT1Q9NXL6 827 aaKnown RBP14.21□□□□□ -0.13
COL9A3-209ENST00000469852 COPG2Q9UBF2 871 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 OPTCQ9UBM4 332 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 PCTPQ9UKL6 214 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 KLK13Q9UKR3 277 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 BTRCQ9Y297 605 aa14.21□□□□□ -0.13
COL9A3-209ENST00000469852 AKAP13Q12802 2813 aa14.21□□□□□ -0.14
COL9A3-209ENST00000469852 CHD6Q8TD26 2715 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 MDC1Q14676 2089 aaKnown RBP14.2□□□□□ -0.14
COL9A3-209ENST00000469852 OR2A25A4D2G3 310 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 K7EPI3 171 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 PPP6CO00743 305 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 DYNC1I1O14576 645 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 HAT1O14929 419 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 RPS17P08708 135 aaKnown RBP14.2□□□□□ -0.14
COL9A3-209ENST00000469852 TSPAN8P19075 237 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 ITIH1P19827 911 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 TAC1P20366 129 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 VARSP26640 1264 aaKnown RBP14.2□□□□□ -0.14
COL9A3-209ENST00000469852 ETV5P41161 510 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 PRKAA2P54646 552 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 CSNK1G2P78368 415 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 ABATP80404 500 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 MEF2AQ02078 507 aaPredicted RBP14.2□□□□□ -0.14
COL9A3-209ENST00000469852 CDC16Q13042 620 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 COL9A2Q14055 689 aaPredicted RBP14.2□□□□□ -0.14
COL9A3-209ENST00000469852 GPR19Q15760 415 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 PDK4Q16654 411 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 UNC50Q53HI1 259 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 ZNF678Q5SXM1 525 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 LRRC70Q7Z2Q7 622 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 GOLGA7Q7Z5G4 137 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 C17orf64Q86WR6 236 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 C10orf107Q8IVU9 208 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 CARFQ8N187 725 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 CACTIN-AS1Q8N1I8 211 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 GALNT15Q8N3T1 639 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 D2HGDHQ8N465 521 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 TEX9Q8N6V9 391 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 BMPERQ8N8U9 685 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 SNX31Q8N9S9 440 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 SLC5A11Q8WWX8 675 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 RNF31Q96EP0 1072 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 LIN37Q96GY3 246 aaPredicted RBP14.2□□□□□ -0.14
COL9A3-209ENST00000469852 PKNOX2Q96KN3 472 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 PLCD4Q9BRC7 762 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 HAUS8Q9BT25 410 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 PCBD2Q9H0N5 130 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 ZBTB26Q9HCK0 441 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 MLXIPLQ9NP71 852 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 TMCO1Q9UM00 188 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 DYRK1BQ9Y463 629 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 LOXL2Q9Y4K0 774 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 KLK4Q9Y5K2 254 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 FRYQ5TBA9 3013 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 KNTC1P50748 2209 aa14.2□□□□□ -0.14
COL9A3-209ENST00000469852 CEP295Q9C0D2 2601 aa14.19□□□□□ -0.14
COL9A3-209ENST00000469852 A0A1B0GTL3 188 aa14.19□□□□□ -0.14
COL9A3-209ENST00000469852 TMEM120BA0PK00 339 aa14.19□□□□□ -0.14
COL9A3-209ENST00000469852 EFCAB7A8K855 629 aa14.19□□□□□ -0.14
COL9A3-209ENST00000469852 HGSO14964 777 aaPredicted RBP14.19□□□□□ -0.14
COL9A3-209ENST00000469852 CCNDBP1O95273 360 aa14.19□□□□□ -0.14
COL9A3-209ENST00000469852 FKBP9O95302 570 aa14.19□□□□□ -0.14
COL9A3-209ENST00000469852 FGF3P11487 239 aaPredicted RBP14.19□□□□□ -0.14
COL9A3-209ENST00000469852 CD22P20273 847 aa14.19□□□□□ -0.14
COL9A3-209ENST00000469852 ALDH3A1P30838 453 aa14.19□□□□□ -0.14
COL9A3-209ENST00000469852 CSTF2P33240 577 aaKnown RBP eCLIP14.19□□□□□ -0.14
COL9A3-209ENST00000469852 MLLT3P42568 568 aaPredicted RBP14.19□□□□□ -0.14
COL9A3-209ENST00000469852 CCR10P46092 362 aa14.19□□□□□ -0.14
COL9A3-209ENST00000469852 CDH13P55290 713 aa14.19□□□□□ -0.14
COL9A3-209ENST00000469852 HSD11B2P80365 405 aa14.19□□□□□ -0.14
COL9A3-209ENST00000469852 CAMK2BQ13554 666 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms