RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 THOC6Q86W42 341 aaKnown RBP16.59■□□□□ 0.25
LIME1-202ENST00000444951 C10orf107Q8IVU9 208 aa16.59■□□□□ 0.25
LIME1-202ENST00000444951 LRRC56Q8IYG6 542 aaPredicted RBP16.59■□□□□ 0.25
LIME1-202ENST00000444951 CCNYL1Q8N7R7 359 aa16.59■□□□□ 0.25
LIME1-202ENST00000444951 OR56A3Q8NH54 315 aa16.59■□□□□ 0.25
LIME1-202ENST00000444951 HMGCLL1Q8TB92 370 aa16.59■□□□□ 0.25
LIME1-202ENST00000444951 MOCOSQ96EN8 888 aa16.59■□□□□ 0.25
LIME1-202ENST00000444951 PPM1MQ96MI6 270 aa16.59■□□□□ 0.25
LIME1-202ENST00000444951 ZNF578Q96N58 590 aaPredicted RBP16.59■□□□□ 0.25
LIME1-202ENST00000444951 EPB41L1Q9H4G0 881 aa16.59■□□□□ 0.25
LIME1-202ENST00000444951 MED4Q9NPJ6 270 aa16.59■□□□□ 0.25
LIME1-202ENST00000444951 INTS7Q9NVH2 962 aaKnown RBP16.59■□□□□ 0.25
LIME1-202ENST00000444951 OPTCQ9UBM4 332 aa16.59■□□□□ 0.25
LIME1-202ENST00000444951 KLHL20Q9Y2M5 609 aa16.59■□□□□ 0.25
LIME1-202ENST00000444951 ANGPTL3Q9Y5C1 460 aa16.59■□□□□ 0.25
LIME1-202ENST00000444951 PCDHB11Q9Y5F2 797 aa16.59■□□□□ 0.25
LIME1-202ENST00000444951 ENTPD2Q9Y5L3 495 aa16.59■□□□□ 0.25
LIME1-202ENST00000444951 A8MU76 341 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 KIF1CO43896 1103 aaKnown RBP16.58■□□□□ 0.24
LIME1-202ENST00000444951 RASSF9O75901 435 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 IPO13O94829 963 aaKnown RBP16.58■□□□□ 0.24
LIME1-202ENST00000444951 NEFHP12036 1026 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 PRDX3P30048 256 aaKnown RBP16.58■□□□□ 0.24
LIME1-202ENST00000444951 ALDH3A1P30838 453 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 SLC6A12P48065 614 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 PPP2R2AP63151 447 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 YBX1P67809 324 aaKnown RBP16.58■□□□□ 0.24
LIME1-202ENST00000444951 SPIDRQ14159 915 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 KIR2DS3Q14952 304 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 GPR155Q7Z3F1 870 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 SLC22A9Q8IVM8 553 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 TEX9Q8N6V9 391 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 ZNF248Q8NDW4 579 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 ZDHHC12Q96GR4 267 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 OR2A14Q96R47 310 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 SGPP1Q9BX95 441 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 CPNE5Q9HCH3 593 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 DNAJC11Q9NVH1 559 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 SH2B3Q9UQQ2 575 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 DYRK1BQ9Y463 629 aa16.58■□□□□ 0.24
LIME1-202ENST00000444951 STX16-NPEPL1H3BU86 382 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 STX16O14662 325 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 CPNE6O95741 557 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 PVRP15151 417 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 TSPAN8P19075 237 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 NR1D1P20393 614 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 CDH3P22223 829 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 CCND1P24385 295 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 GGT5P36269 586 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 ETV4P43268 484 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 SERPINB4P48594 390 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 PRKAA2P54646 552 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 ICE2Q659A1 982 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 SPESP1Q6UW49 350 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 TMPRSS9Q7Z410 1059 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 PLXDC1Q8IUK5 500 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 NUDCD3Q8IVD9 361 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 OR2A1Q8NGT9 310 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 PPP4R1Q8TF05 950 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 UBTD2Q8WUN7 234 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 SLC22A18Q96BI1 424 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 CCDC126Q96EE4 140 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 NSUN5Q96P11 429 aaKnown RBP16.57■□□□□ 0.24
LIME1-202ENST00000444951 TMEM237Q96Q45 408 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 OR4K3Q96R72 315 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 MAP3K3Q99759 626 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 OXSMQ9NWU1 459 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 POMT2Q9UKY4 750 aa16.57■□□□□ 0.24
LIME1-202ENST00000444951 TNPO3Q9Y5L0 923 aaKnown RBP16.57■□□□□ 0.24
LIME1-202ENST00000444951 K7EPI3 171 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 MATN2O00339 956 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 PRICKLE3O43900 615 aaPredicted RBP16.56■□□□□ 0.24
LIME1-202ENST00000444951 SUPT7LO94864 414 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 ZIC2O95409 532 aaPredicted RBP16.56■□□□□ 0.24
LIME1-202ENST00000444951 BPGMP07738 259 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 CDH1P12830 882 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 NPPBP16860 134 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 CMPK1P30085 196 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 ARL1P40616 181 aaPredicted RBP16.56■□□□□ 0.24
LIME1-202ENST00000444951 SEPHS1P49903 392 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 ATP1A2P50993 1020 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 NAGLUP54802 743 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 WDR4P57081 412 aaKnown RBP16.56■□□□□ 0.24
LIME1-202ENST00000444951 ERVPABLB-1P60509 514 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 HERVK_113P63132 956 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 NFKB2Q00653 900 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 PCBP2Q15366 365 aaKnown RBP eCLIP16.56■□□□□ 0.242e-8■□□□□ 8.6
LIME1-202ENST00000444951 RBBP7Q16576 425 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 PDK4Q16654 411 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 CFAP157Q5JU67 520 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 PHF19Q5T6S3 580 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 CACHD1Q5VU97 1274 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 LIPMQ5VYY2 423 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 KIAA1614Q5VZ46 1190 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 TMEM71Q6P5X7 295 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 WDR74Q6RFH5 385 aaPredicted RBP16.56■□□□□ 0.24
LIME1-202ENST00000444951 RBM44Q6ZP01 1051 aaKnown RBP16.56■□□□□ 0.24
LIME1-202ENST00000444951 ZCCHC23Q6ZST2 131 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 LRRC70Q7Z2Q7 622 aa16.56■□□□□ 0.24
LIME1-202ENST00000444951 ADCK2Q7Z695 626 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms