RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 DSCR3O14972 297 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 TSPAN12O95859 305 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 EIF2S1P05198 315 aaKnown RBP14.54□□□□□ -0.08
LIMS3-201ENST00000437679 PIM1P11309 404 aaPredicted RBP14.54□□□□□ -0.08
LIMS3-201ENST00000437679 MAGEA4P43358 317 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 GCGRP47871 477 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 PGGT1BP53609 377 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 SLC12A2P55011 1212 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 TBPL1P62380 186 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 NFKB2Q00653 900 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 NFATC3Q12968 1075 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 COL9A2Q14055 689 aaPredicted RBP14.54□□□□□ -0.08
LIMS3-201ENST00000437679 TRADDQ15628 312 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 PRAMEF13Q5VWM6 474 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 FRMPD2BQ6IN97 320 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 FBXO42Q6P3S6 717 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 AGTRAPQ6RW13 159 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 CYS1Q717R9 158 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 PAQR7Q86WK9 346 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 NKAPQ8N5F7 415 aaKnown RBP14.54□□□□□ -0.08
LIMS3-201ENST00000437679 MNS1Q8NEH6 495 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 PDLIM5Q96HC4 596 aaKnown RBP14.54□□□□□ -0.08
LIMS3-201ENST00000437679 LRRC1Q9BTT6 524 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 SLC25A18Q9H1K4 315 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 SMYD2Q9NRG4 433 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 ENAMQ9NRM1 1142 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 ARL15Q9NXU5 204 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 CCDC88CQ9P219 2028 aa14.54□□□□□ -0.08
LIMS3-201ENST00000437679 MDC1Q14676 2089 aaKnown RBP14.54□□□□□ -0.08
LIMS3-201ENST00000437679 CFAP46Q8IYW2 2715 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 LOC105369274A0A096LPK9 316 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 IGKV1-8A0A0C4DH67 115 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 LOC102723532A0A0G2JNH3 316 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 HYKKA2RU49 373 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 FITM1A5D6W6 292 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 NRP2O60462 931 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 ENO2P09104 434 aaPredicted RBP14.53□□□□□ -0.08
LIMS3-201ENST00000437679 EZRP15311 586 aaKnown RBP14.53□□□□□ -0.08
LIMS3-201ENST00000437679 ZNF37AP17032 561 aaPredicted RBP14.53□□□□□ -0.08
LIMS3-201ENST00000437679 CCND1P24385 295 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 HRH2P25021 359 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 FOLR3P41439 243 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 PMS2P54278 862 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 AP1S2P56377 157 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 TAS2R39P59534 338 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 RELAQ04206 551 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 NAE1Q13564 534 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 SLC9A5Q14940 896 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 PHKG1Q16816 387 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 ZNF425Q6IV72 752 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 ZDHHC24Q6UX98 284 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 MBOAT1Q6ZNC8 495 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 ZNF605Q86T29 641 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 RAB43Q86YS6 212 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 OR4N4Q8N0Y3 316 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 RERGQ96A58 199 aaPredicted RBP14.53□□□□□ -0.08
LIMS3-201ENST00000437679 ALKBH8Q96BT7 664 aaKnown RBP14.53□□□□□ -0.08
LIMS3-201ENST00000437679 CPNE1Q99829 537 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 ATG10Q9H0Y0 220 aa14.53□□□□□ -0.08
LIMS3-201ENST00000437679 PTRH2Q9Y3E5 179 aaKnown RBP14.53□□□□□ -0.08
LIMS3-201ENST00000437679 ZNF462Q96JM2 2506 aa14.52□□□□□ -0.08
LIMS3-201ENST00000437679 ESYT3A0FGR9 886 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 FAM159BA6NKW6 160 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 CXorf49A8MYA2 514 aaPredicted RBP14.52□□□□□ -0.09
LIMS3-201ENST00000437679 B8ZZF3 427 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 H0YGG7 62 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 MKRN2OSH3BPM6 223 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 H7BY64 318 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 RFPL1O75677 317 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 PIAS1O75925 651 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 STX2P32856 288 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 GP5P40197 560 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 GPX6P59796 221 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 ARF3P61204 181 aaPredicted RBP14.52□□□□□ -0.09
LIMS3-201ENST00000437679 POU4F1Q01851 419 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 GUCY2DQ02846 1103 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 MUM1Q2TAK8 710 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 FAM69BQ5VUD6 431 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 CAPN13Q6MZZ7 669 aaPredicted RBP14.52□□□□□ -0.09
LIMS3-201ENST00000437679 MRPL14Q6P1L8 145 aaKnown RBP14.52□□□□□ -0.09
LIMS3-201ENST00000437679 TMEM207Q6UWW9 146 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 APLFQ8IW19 511 aaPredicted RBP14.52□□□□□ -0.09
LIMS3-201ENST00000437679 CTAGE3PQ8IX95 158 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 MMGT1Q8N4V1 131 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 CSNK1A1LQ8N752 337 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 C9orf43Q8TAL5 461 aaPredicted RBP14.52□□□□□ -0.09
LIMS3-201ENST00000437679 ADAMTS17Q8TE56 1095 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 ATL1Q8WXF7 558 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 ANKRD7Q92527 254 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 TSPAN17Q96FV3 270 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 PRAP1Q96NZ9 151 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 POPDC3Q9HBV1 291 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 GPAMQ9HCL2 828 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 TMEM184CQ9NVA4 438 aa14.52□□□□□ -0.09
LIMS3-201ENST00000437679 CUEDC1Q9NWM3 386 aaPredicted RBP14.52□□□□□ -0.09
LIMS3-201ENST00000437679 NOVA2Q9UNW9 492 aaKnown RBP14.52□□□□□ -0.09
LIMS3-201ENST00000437679 HEMK1Q9Y5R4 338 aaPredicted RBP14.52□□□□□ -0.09
LIMS3-201ENST00000437679 CTAGE15A4D2H0 777 aa14.51□□□□□ -0.09
LIMS3-201ENST00000437679 ARGFXA6NJG6 315 aa14.51□□□□□ -0.09
LIMS3-201ENST00000437679 TXNDC9O14530 226 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms