RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 LURAP1LQ8IV03 231 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 SPNS2Q8IVW8 549 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 CFAP206Q8IYR0 622 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 SLC22A15Q8IZD6 547 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 STAG3L4Q8TBR4 150 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 KIAA1191Q96A73 305 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 MIB2Q96AX9 1013 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 SH3KBP1Q96B97 665 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 PTERQ96BW5 349 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 PDLIM5Q96HC4 596 aaKnown RBP11.75□□□□□ -0.53
PTPRF-208ENST00000437607 EFHD1Q9BUP0 239 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 TRIT1Q9H3H1 467 aaKnown RBP11.75□□□□□ -0.53
PTPRF-208ENST00000437607 C12orf65Q9H3J6 166 aaKnown RBP11.75□□□□□ -0.53
PTPRF-208ENST00000437607 TFB2MQ9H5Q4 396 aaKnown RBP11.75□□□□□ -0.53
PTPRF-208ENST00000437607 KLC4Q9NSK0 619 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 CPSF2Q9P2I0 782 aaKnown RBP11.75□□□□□ -0.53
PTPRF-208ENST00000437607 EMCNQ9ULC0 261 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 TP53TG5Q9Y2B4 290 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 MAN2B2Q9Y2E5 1009 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 KCNMB2Q9Y691 235 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 CACNA1DQ01668 2161 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 CELSR2Q9HCU4 2923 aa11.75□□□□□ -0.53
PTPRF-208ENST00000437607 PIKFYVEQ9Y2I7 2098 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 KIR2DS5A0A0G2JLQ3 304 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 A0A0G2JNG1 304 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 PRR19A6NJB7 356 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 PDZK1P1A8MUH7 402 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 KIR2DS3K7RE56 304 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 CDC7O00311 574 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 SLCO2B1O94956 709 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 CATP04040 527 aaKnown RBP11.74□□□□□ -0.53
PTPRF-208ENST00000437607 GP1BBP13224 206 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 ETV4P43268 484 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 SERPINB4P48594 390 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 SH3BP2P78314 561 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 ASPHQ12797 758 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 KIR2DS5Q14953 304 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 ZNF658BQ4V348 819 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-208ENST00000437607 LACTB2Q53H82 288 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-208ENST00000437607 ZYG11AQ6WRX3 759 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 VRK3Q8IV63 474 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 LILRA3Q8N6C8 439 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-208ENST00000437607 PPP1R14CQ8TAE6 165 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 RHEBL1Q8TAI7 183 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 GPR78Q96P69 363 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 TRIM54Q9BYV2 358 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-208ENST00000437607 STN1Q9H668 368 aaKnown RBP11.74□□□□□ -0.53
PTPRF-208ENST00000437607 NUDT4Q9NZJ9 180 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 ZNF624Q9P2J8 865 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-208ENST00000437607 COPG2Q9UBF2 871 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 SLC23A2Q9UGH3 650 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 TMCO1Q9UM00 188 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 SEC16AO15027 2179 aa11.74□□□□□ -0.53
PTPRF-208ENST00000437607 OR5K4A6NMS3 321 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 SNRNP200O75643 2136 aaKnown RBP11.73□□□□□ -0.53
PTPRF-208ENST00000437607 RPN2P04844 631 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 ENO2P09104 434 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-208ENST00000437607 DHRS4L1P0CG22 281 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 GFAPP14136 432 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 SLC2A4P14672 509 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 CPA3P15088 417 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 TYRP1P17643 537 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 XRCC1P18887 633 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-208ENST00000437607 IDSP22304 550 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 ATP5F1P24539 256 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-208ENST00000437607 DLSTP36957 453 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 SLC19A1P41440 591 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 HALP42357 657 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 CD97P48960 835 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 CLCNKAP51800 687 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 MC1RQ01726 317 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 MPP2Q14168 576 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 PCLAFQ15004 111 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 OR4D1Q15615 310 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 FAM83HQ6ZRV2 1179 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-208ENST00000437607 TMEM26Q6ZUK4 368 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 UBE2R2Q712K3 238 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-208ENST00000437607 GPSM1Q86YR5 675 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 PLXDC1Q8IUK5 500 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 SLC22A9Q8IVM8 553 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 TRIM42Q8IWZ5 723 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 ESX1Q8N693 406 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 GALNT6Q8NCL4 622 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 CFAP61Q8NHU2 1237 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 DENND1AQ8TEH3 1009 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 CCDC126Q96EE4 140 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 RMDN2Q96LZ7 410 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 PSMG3-AS1Q96PY0 264 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 ATOH8Q96SQ7 321 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 EGFL8Q99944 293 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 ULBP3Q9BZM4 244 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 EPB41L1Q9H4G0 881 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 UCK1Q9HA47 277 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 CD274Q9NZQ7 290 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 CROTQ9UKG9 612 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 ACSL5Q9ULC5 683 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 CDYLQ9Y232 598 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 OARD1Q9Y530 152 aa11.73□□□□□ -0.53
PTPRF-208ENST00000437607 ANKRD12Q6UB98 2062 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms