RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ATE1O95260 518 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 HSD17B1P14061 328 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 COX7A2P14406 83 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 HOXB3P14651 431 aaPredicted RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 ZNF182P17025 639 aaPredicted RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 PTPN2P17706 415 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 S100A3P33764 101 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 MAGEA10P43363 369 aaPredicted RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 GPR1P46091 355 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 LRRC74AQ0VAA2 488 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 DGCR6Q14129 220 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 DOC2AQ14183 400 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 INPP5AQ14642 412 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 SMN1Q16637 294 aaKnown RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 XKR7Q5GH72 579 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 CES5AQ6NT32 575 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 TRIM73Q86UV7 250 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 NLGN4XQ8N0W4 816 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 SNX19Q92543 992 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 GTF2H4Q92759 462 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 NEIL2Q969S2 332 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 FAM120BQ96EK7 910 aaKnown RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 ZNF583Q96ND8 569 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 OR4K3Q96R72 315 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 ZNF382Q96SR6 550 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 C19orf43Q9BQ61 176 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 HEPHQ9BQS7 1158 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 ADI1Q9BV57 179 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 MRPS26Q9BYN8 205 aaKnown RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 POLR1BQ9H9Y6 1135 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 SGK2Q9HBY8 427 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 TMEM45AQ9NWC5 275 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 SERGEFQ9UGK8 458 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 MYRFQ9Y2G1 1151 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 TNPO3Q9Y5L0 923 aaKnown RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 FADS3Q9Y5Q0 445 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 SNX11Q9Y5W9 270 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 AQP12BA6NM10 295 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 H0Y858 1186 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 RFXANKO14593 260 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 GMNNO75496 209 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 H6PDO95479 791 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 SDC1P18827 310 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 SHMT2P34897 504 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 SOAT1P35610 550 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 RPS14P62263 151 aaKnown RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 RPS13P62277 151 aaKnown RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 CYP4F3Q08477 520 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 BNIP2Q12982 314 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 WDR53Q7Z5U6 358 aaPredicted RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 ZFAND4Q86XD8 727 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 AQP12AQ8IXF9 295 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 CHPFQ8IZ52 775 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 GOLM1Q8NBJ4 401 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 OR5AR1Q8NGP9 310 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 THAP11Q96EK4 314 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 ZBTB18Q99592 522 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 HERC2P3Q9BVR0 1158 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 RBM38Q9H0Z9 239 aaKnown RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 ING2Q9H160 280 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 RERGLQ9H628 205 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 PTTG2Q9NZH5 202 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 NDUFA13Q9P0J0 144 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 KCNK6Q9Y257 313 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 ASF1AQ9Y294 204 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 SSUH2Q9Y2M2 353 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 MAP4K5Q9Y4K4 846 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 PLXNA4Q9HCM2 1894 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 HEPACAM2A8MVW5 462 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 FAM227AF5H4B4 570 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 GFRA2O00451 464 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 RGS14O43566 566 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 SH3BP5O60239 455 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 ABCB7O75027 752 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 XYLBO75191 536 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 LDLRP01130 860 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 FTH1P02794 183 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 CYP17A1P05093 508 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 RPS3P23396 243 aaKnown RBP eCLIP8.11□□□□□ -1.11
CD44-208ENST00000428726 AOAHP28039 575 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 TIE1P35590 1138 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 NR1H2P55055 460 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 ST8SIA6P61647 398 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 PMS2P3Q13401 168 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 ZNF284Q2VY69 593 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 CACHD1Q5VU97 1274 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 ERMP1Q7Z2K6 904 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 HID1Q8IV36 788 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 AHI1Q8N157 1196 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 CNIH3Q8TBE1 160 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 MCOLN3Q8TDD5 553 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 NCSTNQ92542 709 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 C12orf43Q96C57 262 aaKnown RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 YIPF4Q9BSR8 244 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 TRIM54Q9BYV2 358 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 BRINP2Q9C0B6 783 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 ARMC1Q9NVT9 282 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 VNN3Q9NY84 501 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms