RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TNFRSF10AO00220 468 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 CAV3P56539 151 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 UGT3A2Q3SY77 523 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 TRAPPC5Q8IUR0 188 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF675Q8TD23 568 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 TFB2MQ9H5Q4 396 aaKnown RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 PRSS44E7EML9 344 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 ESR1P03372 595 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 RPS17P08708 135 aaKnown RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 PRPF38BQ5VTL8 546 aaKnown RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 PPP2R2DQ66LE6 453 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 ARHGAP11AQ6P4F7 1023 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 OR4C15Q8NGM1 316 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 FNIP2Q9P278 1114 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 DERAQ9Y315 318 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 DCDC2CA8MYV0 355 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 SCGB2A1O75556 95 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 RPL10P27635 214 aaKnown RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 PTPN6P29350 595 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 MSX2P35548 267 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 PEA15Q15121 130 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 ELAC1Q9H777 363 aaKnown RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 PTPRHQ9HD43 1115 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 TO15178 435 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 RGS9O75916 674 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 UBXN7O94888 489 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 RAB3AP20336 220 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 CXCR3P49682 368 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 JAM2P57087 298 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 ABHD18Q0P651 414 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 HSPA14Q0VDF9 509 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 HSDL1Q3SXM5 330 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 SETD7Q8WTS6 366 aaKnown RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 B3GNT4Q9C0J1 378 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 GABRDO14764 452 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 LRATO95237 230 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 TYRP14679 529 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF460Q14592 562 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 EIF4HQ15056 248 aaKnown RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 NUP54Q7Z3B4 507 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 KBTBD6Q86V97 674 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 LGI4Q8N135 537 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF565Q8N9K5 539 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 ANKRD53Q8N9V6 530 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 SLC16A10Q8TF71 515 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 GTPBP3Q969Y2 492 aaKnown RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 PIWIL1Q96J94 861 aaKnown RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 BPNT1O95861 308 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 GLP1RP43220 463 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 RARRES1P49788 294 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 GRIK2Q13002 908 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 MAPK14Q16539 360 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 RNASE12Q5GAN4 147 aaKnown RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 C3P1Q6ZMU1 363 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 DEFB106AQ8N104 65 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 CELF6Q96J87 481 aaKnown RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 MARCH2Q9P0N8 246 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 MED31Q9Y3C7 131 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 PRR36Q9H6K5 1346 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 PIGRP01833 764 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 CDK1P06493 297 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF823P16415 610 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 PRKCAP17252 672 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 GBE1Q04446 702 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 MARCH9Q86YJ5 346 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 SAMD12Q8N8I0 201 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 BBS1Q8NFJ9 593 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 SMAP2Q8WU79 429 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 MTFMTQ96DP5 389 aaKnown RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 IDI2Q9BXS1 227 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 PPIL3Q9H2H8 161 aaKnown RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 CNTNAP4Q9C0A0 1308 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 ZSCAN5DPP0CG00 497 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 RPL35P42766 123 aaKnown RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 OR1G1P47890 313 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 SCGB2B2Q4G0G5 96 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 METTL7BQ6UX53 244 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF574Q6ZN55 896 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 SLC22A15Q8IZD6 547 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 EFCAB3Q8N7B9 438 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 LNX1Q8TBB1 728 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 SLC2A14Q8TDB8 520 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 PRMT6Q96LA8 375 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-206ENST00000409809 OMDQ99983 421 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 CEP41Q9BYV8 373 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 HCN4Q9Y3Q4 1203 aa12.59□□□□□ -0.39
COL6A3-206ENST00000409809 SLC7A4O43246 635 aa12.58□□□□□ -0.39
COL6A3-206ENST00000409809 NOBOXO60393 691 aa12.58□□□□□ -0.39
COL6A3-206ENST00000409809 EARS2Q5JPH6 523 aaKnown RBP12.58□□□□□ -0.39
COL6A3-206ENST00000409809 KIAA0930Q6ICG6 404 aaPredicted RBP12.58□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF527Q8NB42 609 aa12.58□□□□□ -0.39
COL6A3-206ENST00000409809 CPT1BQ92523 772 aa12.58□□□□□ -0.39
COL6A3-206ENST00000409809 MYRFLQ96LU7 910 aa12.58□□□□□ -0.39
COL6A3-206ENST00000409809 P2RX2Q9UBL9 471 aa12.58□□□□□ -0.39
COL6A3-206ENST00000409809 CHATP28329 748 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 MARCKSL1P49006 195 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 PRKAG1P54619 331 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 ARFRP1Q13795 201 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 PTPN20Q4JDL3 420 aa12.58□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF584Q8IVC4 421 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms