RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 DYRK1BQ9Y463 629 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 PCDHGA11Q9Y5H2 935 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 SNRNP200O75643 2136 aaKnown RBP13.3□□□□□ -0.28
PTPRF-202ENST00000372405 NME4O00746 187 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 ACOT8O14734 319 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 KCNJ13O60928 360 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 APBB3O95704 486 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 CDH1P12830 882 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 SDC1P18827 310 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 IDSP22304 550 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 ME2P23368 584 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 SLC6A2P23975 617 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 PSMB5P28074 263 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 SLC7A2P52569 658 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 SF1Q15637 639 aaKnown RBP13.3□□□□□ -0.28
PTPRF-202ENST00000372405 CACHD1Q5VU97 1274 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 NXPE4Q6UWF7 544 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 LCTLQ6UWM7 567 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 LAS2Q8IYD9 372 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 SYNPOQ8N3V7 929 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 MINDY1Q8N5J2 469 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 FAM160A2Q8N612 972 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-202ENST00000372405 CCL4L1Q8NHW4 92 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 BIRC7Q96CA5 298 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 APOLD1Q96LR9 279 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 CAMK1GQ96NX5 476 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 FERD3LQ96RJ6 166 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 CLMPQ9H6B4 373 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 LTB4R2Q9NPC1 389 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 ABCD2Q9UBJ2 740 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 VPS29Q9UBQ0 182 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 TBC1D29Q9UFV1 150 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 LEF1Q9UJU2 399 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-202ENST00000372405 SLCO1B1Q9Y6L6 691 aa13.3□□□□□ -0.28
PTPRF-202ENST00000372405 ARHGEF17Q96PE2 2063 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-202ENST00000372405 PIPSLA2A3N6 862 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 TRIM38O00635 465 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 SH3BGRLO75368 114 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 LMNAP02545 664 aaKnown RBP13.29□□□□□ -0.28
PTPRF-202ENST00000372405 PCNAP12004 261 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 TCN1P20061 433 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-202ENST00000372405 AK4P27144 223 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-202ENST00000372405 AKT2P31751 481 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 CTBSQ01459 385 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 UBXN2BQ14CS0 331 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 RPE65Q16518 533 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 THEMIS2Q5TEJ8 643 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 NOXRED1Q6NXP6 359 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 MED27Q6P2C8 311 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 RD3Q7Z3Z2 195 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 FAM129CQ86XR2 697 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 KIAA2013Q8IYS2 634 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 SLC22A18ASQ8N1D0 253 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 HIPK4Q8NE63 616 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 RLN3Q8WXF3 142 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 STMN2Q93045 179 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 EGLN2Q96KS0 407 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 XKR8Q9H6D3 395 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 BRF2Q9HAW0 419 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 CMTM6Q9NX76 183 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 WSB2Q9NYS7 404 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-202ENST00000372405 SPATA7Q9P0W8 599 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 TAC3Q9UHF0 121 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 NEUROG3Q9Y4Z2 214 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 VCANP13611 3396 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 PDZK1P1A8MUH7 402 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 HSD3B1P14060 373 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 HSD3B2P26439 372 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 CCR5P51681 352 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 STARD6P59095 220 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 RPS13P62277 151 aaKnown RBP13.29□□□□□ -0.28
PTPRF-202ENST00000372405 ALG11Q2TAA5 492 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 FAM174BQ3ZCQ3 159 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 SPANXN4Q5MJ08 99 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 KIAA0895LQ68EN5 471 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 DLEU7Q6UYE1 221 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 Q6ZSR6 202 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 ABI3BPQ7Z7G0 1075 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 SLC15A3Q8IY34 581 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 DPP10Q8N608 796 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 TSTD1Q8NFU3 115 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 OR13H1Q8NG92 308 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 TSSK3Q96PN8 268 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 HOPXQ9BPY8 73 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-202ENST00000372405 ORAI3Q9BRQ5 295 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 EFCAB11Q9BUY7 163 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 GPR174Q9BXC1 333 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 EBPLQ9BY08 206 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 TPSD1Q9BZJ3 242 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 DPY30Q9C005 99 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 TMEM168Q9H0V1 697 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 CUEDC1Q9NWM3 386 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-202ENST00000372405 STX18Q9P2W9 335 aaKnown RBP13.29□□□□□ -0.28
PTPRF-202ENST00000372405 TMED5Q9Y3A6 229 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 PCDHA9Q9Y5H5 950 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 HS3ST3A1Q9Y663 406 aa13.29□□□□□ -0.28
PTPRF-202ENST00000372405 GON4LQ3T8J9 2241 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 DYTNA2CJ06 578 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 FAM170BA6NMN3 283 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 TNFRSF10CO14798 259 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms