RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 SCARA3Q6AZY7 606 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 C22orf39Q6P5X5 142 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 NUDT13Q86X67 352 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SPATS2Q86XZ4 545 aaKnown RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 OR4N5Q8IXE1 308 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 TRPV1Q8NER1 839 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 COG8Q96MW5 612 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ZNF570Q96NI8 536 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 GPA33Q99795 319 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 LRFN3Q9BTN0 628 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 G6PC3Q9BUM1 346 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 MFRPQ9BY79 579 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 LRRC19Q9H756 370 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.99□□□□□ -1.77
USH2A-202ENST00000366942 SCN3BQ9NY72 215 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ZDHHC3Q9NYG2 299 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SNX13Q9Y5W8 968 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 INO80Q9ULG1 1556 aaPredicted RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 KNTC1P50748 2209 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ADAMTS13Q76LX8 1427 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SLIT1O75093 1534 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 OR5H15A6NDH6 313 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 OR5H14A6NHG9 310 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 OR5H1A6NKK0 313 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 C3orf80F5H4A9 247 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CCL21O00585 134 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CDX4O14627 284 aaPredicted RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 AP2A2O94973 939 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 PGCP20142 388 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CCNOP22674 350 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SSR4P51571 173 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 MANFP55145 182 aaKnown RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 PCBD1P61457 104 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CDK16Q00536 496 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 NAB1Q13506 487 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ZNF846Q147U1 533 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 MEP1AQ16819 746 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ZACNQ401N2 412 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 C2CD6Q53TS8 623 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 LCN1P1Q5VSP4 162 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 MED27Q6P2C8 311 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 DET1Q7L5Y6 550 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SYVN1Q86TM6 617 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 NUDCD3Q8IVD9 361 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 MB21D2Q8IYB1 491 aaPredicted RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 ZNF440Q8IYI8 595 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ZNF808Q8N4W9 903 aaPredicted RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 GSTCDQ8NEC7 633 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CADM4Q8NFZ8 388 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SPPL3Q8TCT6 385 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 TFGQ92734 400 aaPredicted RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 AIFM3Q96NN9 605 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 TBL1YQ9BQ87 522 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 TMEM43Q9BTV4 400 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CENPOQ9BU64 300 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 C3orf18Q9UK00 162 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 GRID1Q9ULK0 1009 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 TRPM1Q7Z4N2 1603 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 PREX1Q8TCU6 1659 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ZSCAN5BA6NJL1 495 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 FAM90A27PA6NNH2 459 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 E9PQ18 207 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 PDPK1O15530 556 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SEC14L5O43304 696 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 CST8O60676 142 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 DNAJB6O75190 326 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 BCAS1O75363 584 aaPredicted RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 EPN2O95208 641 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 AP2A1O95782 977 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 MT-CYBP00156 380 aaPredicted RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 CD1EP15812 388 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 GNAZP19086 355 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 FEN1P39748 380 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 NUDT6P53370 316 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SMAD2Q15796 467 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 ATP6AP1LQ52LC2 224 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 HES3Q5TGS1 186 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SLX4IPQ5VYV7 408 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ARHGAP17Q68EM7 881 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 NADSYN1Q6IA69 706 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 POMZP3Q6PJE2 187 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 CRTC1Q6UUV9 634 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 GALNT12Q8IXK2 581 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 UBQLNLQ8IYU4 475 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 FAM71DQ8N9W8 422 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 MS4A4AQ96JQ5 239 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ENKD1Q9H0I2 346 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 CD248Q9HCU0 757 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 TRMT1Q9NXH9 659 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 RAI2Q9Y5P3 530 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 C17orf113A0A1B0GUU1 675 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 FAM86B1E9PN63 330 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SLC30A4O14863 429 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 MMP20O60882 483 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SEC22BO75396 215 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 POP7O75817 140 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 OR6B1O95007 311 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 OAS1P00973 400 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 PDYNP01213 254 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 C8BP07358 591 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms