RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 NPC1O15118 1278 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 B4GAT1O43505 415 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 CISD3P0C7P0 127 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 DCTP40126 519 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 VAC14Q08AM6 782 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 ACOX1Q15067 660 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 DPY19L1Q2PZI1 675 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 TTC23Q5W5X9 447 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 RTL10Q7L3V2 364 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 THAP5Q7Z6K1 395 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 KLHDC8AQ8IYD2 350 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 OR5K1Q8NHB7 308 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 HCAR2Q8TDS4 363 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 C11orf24Q96F05 449 aaPredicted RBP20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 LTB4R2Q9NPC1 389 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 CDC14AQ9UNH5 594 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 ITM2BQ9Y287 266 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 LAMA3Q16787 3333 aa20.17■□□□□ 0.82
CCDC88B-203ENST00000359902 EVPLLA8MZ36 301 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 H0YIV9 168 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 FPGTO14772 594 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 SLC16A8O95907 504 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 CATP04040 527 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 ELFN1P0C7U0 828 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 CDK4P11802 303 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 EPCAMP16422 314 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 BMPR1AP36894 532 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 BDKRB1P46663 353 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 DDX39BQ13838 428 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 RAB39AQ14964 217 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 SF1Q15637 639 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 GRHL2Q6ISB3 625 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 GRASPQ7Z6J2 395 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 SERPINA11Q86U17 422 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 ING5Q8WYH8 240 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 LRRC3BQ96PB8 259 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 PANX1Q96RD7 426 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 PKP4Q99569 1192 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 ING2Q9H160 280 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 OCEL1Q9H607 264 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 AASDHPPTQ9NRN7 309 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 CXXC1Q9P0U4 656 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 CLIC1O00299 241 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 HOXB6P17509 224 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 ENGP17813 658 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 PRKACGP22612 351 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 POLR2IP36954 125 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 PCDH1Q08174 1060 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 DHCR24Q15392 516 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 TMEM220Q6QAJ8 160 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 PARS2Q7L3T8 475 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 CHPFQ8IZ52 775 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 EID3Q8N140 333 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 OR8J2Q8NGG1 315 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 OR56A3Q8NH54 315 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 PNPT1Q8TCS8 783 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 SPPL3Q8TCT6 385 aa20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 C12orf43Q96C57 262 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 RUVBL1Q9Y265 456 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-203ENST00000359902 CCNDBP1O95273 360 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 SRPRAP08240 638 aaKnown RBP20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 IMPA1P29218 277 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 PDHA2P29803 388 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 TTKP33981 857 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 CTNNB1P35222 781 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 PIGAP37287 484 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 HNF4AP41235 474 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 VASPP50552 380 aaPredicted RBP20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 RPS6KA3P51812 740 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 EPS8Q12929 822 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 C8orf59Q8N0T1 100 aaPredicted RBP20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 HEMK1Q9Y5R4 338 aaPredicted RBP20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 YY2O15391 372 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 ETHE1O95571 254 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 COX7A2P14406 83 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 GJA8P48165 433 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 DGKGP49619 791 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 C21orf58P58505 322 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 SPIDRQ14159 915 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 ZNF697Q5TEC3 545 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 ADNP2Q6IQ32 1131 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 ZCCHC8Q6NZY4 707 aaKnown RBP20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 ERAP2Q6P179 960 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 ZNF773Q6PK81 442 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 WRAP53Q9BUR4 548 aaKnown RBP20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 SGK2Q9HBY8 427 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 PCDHGA8Q9Y5G5 932 aa20.15■□□□□ 0.82
CCDC88B-203ENST00000359902 SLC9A3R1O14745 358 aaPredicted RBP20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 E2F6O75461 281 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 KCNK5O95279 499 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 FGBP02675 491 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 CEBPBP17676 345 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 GPX2P18283 190 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 HOXA9P31269 272 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 MAGEA2P43356 314 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 ACSM2AQ08AH3 577 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 KCNAB2Q13303 367 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 ACSM2BQ68CK6 577 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 ZNF621Q6ZSS3 439 aa20.14■□□□□ 0.82
CCDC88B-203ENST00000359902 NLRP8Q86W28 1048 aa20.14■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms