RNA–Protein interactions for RNA: ENST00000046640.7

CTNS-201, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNS, Length 2,866 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-201ENST00000046640 TRPS1Q9UHF7 1281 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 PPT2Q9UMR5 302 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 VPS4AQ9UN37 437 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 FADS2P1A8MWK0 482 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 PLK4O00444 970 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 ZNF12P17014 697 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 S100A3P33764 101 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 PPM1AP35813 382 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 TGFBR1P36897 503 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 GSSP48637 474 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 MRPL19P49406 292 aaKnown RBP12.75□□□□□ -0.37
CTNS-201ENST00000046640 MESP2Q0VG99 397 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 SLC14A1Q13336 389 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 GTF2H3Q13889 308 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 GRIN2CQ14957 1233 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 TMEM236Q5W0B7 351 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 SLCO6A1Q86UG4 719 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 GOLM1Q8NBJ4 401 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 NETO1Q8TDF5 533 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 RAB2BQ8WUD1 216 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 GLMNQ92990 594 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 USP7Q93009 1102 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 MCCC1Q96RQ3 725 aaPredicted RBP12.75□□□□□ -0.37
CTNS-201ENST00000046640 CLMPQ9H6B4 373 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 PAK1IP1Q9NWT1 392 aaPredicted RBP12.75□□□□□ -0.37
CTNS-201ENST00000046640 ZNF639Q9UID6 485 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 SZT2Q5T011 3432 aa12.75□□□□□ -0.37
CTNS-201ENST00000046640 CHD9Q3L8U1 2897 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 ELOVL7A1L3X0 281 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 MYO1GB0I1T2 1018 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 CXCR6O00574 342 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 CTSLP07711 333 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 RHOP08100 348 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 C7P10643 843 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 MSH3P20585 1137 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 XPAP23025 273 aaPredicted RBP12.74□□□□□ -0.37
CTNS-201ENST00000046640 CTSCP53634 463 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 VBP1P61758 197 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 UTS2BQ765I0 119 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 CYP2U1Q7Z449 544 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 TERB1Q8NA31 727 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 ZNF548Q8NEK5 533 aaPredicted RBP12.74□□□□□ -0.37
CTNS-201ENST00000046640 OR7A2PQ8NGA2 310 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 SLC35B4Q969S0 331 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 TAMM41Q96BW9 452 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 BARD1Q99728 777 aaKnown RBP12.74□□□□□ -0.37
CTNS-201ENST00000046640 NEURL2Q9BR09 285 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 SLC12A9Q9BXP2 914 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 MUC13Q9H3R2 512 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 RDH14Q9HBH5 336 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 SPHK2Q9NRA0 654 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 ERGIC3Q9Y282 383 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 RBMX2Q9Y388 322 aaKnown RBP12.74□□□□□ -0.37
CTNS-201ENST00000046640 OBSL1O75147 1896 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 LOC100130705A0A1B0GUX0 176 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 TSPAN6O43657 245 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 SERPINB7O75635 380 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 NPPAP01160 153 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 IL6P05231 212 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 SDC1P18827 310 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 BDKRB1P46663 353 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 CASP9P55211 416 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 GRSF1Q12849 480 aaKnown RBP eCLIP12.74□□□□□ -0.37
CTNS-201ENST00000046640 MAD2L1Q13257 205 aaPredicted RBP12.74□□□□□ -0.37
CTNS-201ENST00000046640 PAGE2BQ5JRK9 111 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 MCOLN3Q8TDD5 553 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 ZFP90Q8TF47 636 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 FAM120BQ96EK7 910 aaKnown RBP12.74□□□□□ -0.37
CTNS-201ENST00000046640 RIBC2Q9H4K1 309 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 FBXO10Q9UK96 956 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 WDR37Q9Y2I8 494 aa12.74□□□□□ -0.37
CTNS-201ENST00000046640 GOLGA4Q13439 2230 aaKnown RBP12.73□□□□□ -0.37
CTNS-201ENST00000046640 C16orf96A6NNT2 1141 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 MOSPD3O75425 235 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 SERPINA1P01009 418 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 TIMP1P01033 207 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 POLR2EP19388 210 aaKnown RBP12.73□□□□□ -0.37
CTNS-201ENST00000046640 IRF8Q02556 426 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 OCA2Q04671 838 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 NAE1Q13564 534 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 SKIV2LQ15477 1246 aaKnown RBP12.73□□□□□ -0.37
CTNS-201ENST00000046640 XKR6Q5GH73 641 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 TTC23Q5W5X9 447 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 GTF2IRD2BQ6EKJ0 949 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 DOK6Q6PKX4 331 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 GRASPQ7Z6J2 395 aaPredicted RBP12.73□□□□□ -0.37
CTNS-201ENST00000046640 GTF2IRD2Q86UP8 949 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 OR8J3Q8NGG0 315 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 NDNFQ8TB73 568 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 NODALQ96S42 347 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 TUBA1CQ9BQE3 449 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 UGT2B28Q9BY64 529 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 SNX6Q9UNH7 406 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 ERVW-1Q9UQF0 538 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 DYTNA2CJ06 578 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 ANTXRLA6NF34 631 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 KPNA3O00505 521 aaPredicted RBP12.73□□□□□ -0.37
CTNS-201ENST00000046640 SULT1C4O75897 302 aa12.73□□□□□ -0.37
CTNS-201ENST00000046640 CPSF4O95639 269 aaKnown RBP12.73□□□□□ -0.37
CTNS-201ENST00000046640 ZNF682O95780 498 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms