RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 COPAP53621 1224 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 MLLT6P55198 1093 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 DNAJC3Q13217 504 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 NFYCQ13952 458 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CCDC153Q494R4 210 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 C1orf146Q5VVC0 180 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 TLDC1Q6P9B6 456 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 IYDQ6PHW0 289 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 DPY19L3Q6ZPD9 716 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 KIAA0895Q8NCT3 520 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 HNRNPLLQ8WVV9 542 aaKnown RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 TCEAL4Q96EI5 215 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 OR1F2PQ96R84 312 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 TMEM120AQ9BXJ8 343 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 GPR83Q9NYM4 423 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 DMGDHQ9UI17 866 aaKnown RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 LOC102723532A0A0G2JNH3 316 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 RGSL1A5PLK6 1076 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 FFAR3O14843 346 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 GSC2O15499 205 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 GPR42O15529 346 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 STC2O76061 302 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 OAS1P00973 400 aaKnown RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 LPLP06858 475 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 SLC6A2P23975 617 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 ITIH4Q14624 930 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 STK11Q15831 433 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 FUT11Q495W5 492 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 FAM133BQ5BKY9 247 aaKnown RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 KCTD16Q68DU8 428 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 FAM109BQ6ICB4 259 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 FIGLAQ6QHK4 219 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CASP12Q6UXS9 341 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 KIF18BQ86Y91 864 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CROCCP3Q8IVE0 287 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CMASQ8NFW8 434 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 SORCS1Q8WY21 1168 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 LOXL4Q96JB6 756 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 FAM129BQ96TA1 746 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 ELF4Q99607 663 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 RNF32Q9H0A6 362 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 PRDM8Q9NQV8 689 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 FBXO6Q9NRD1 293 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 TMEM184BQ9Y519 407 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 MCM3APO60318 1980 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 ERI3O43414 337 aaKnown RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 OR6B1O95007 311 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 MED26O95402 600 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 NUDT17P0C025 328 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 HGFP14210 728 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 GNGT1P63211 74 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 BLMHQ13867 455 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 FAM26DQ5JW98 314 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 FHL5Q5TD97 284 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 EGFLAMQ63HQ2 1017 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 LRRC66Q68CR7 880 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 BICRALQ6AI39 1079 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 TMEM211Q6ICI0 200 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 YTHDF3Q7Z739 585 aaKnown RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 UBQLNLQ8IYU4 475 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 SVOPQ8N4V2 548 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CSNK1A1LQ8N752 337 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 C9orf43Q8TAL5 461 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 ASB16Q96NS5 453 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 LCHNA4D1U4 455 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CPNE3O75131 537 aaKnown RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 SCRG1O75711 98 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 PRKCGP05129 697 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 C6P13671 934 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CCNA2P20248 432 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 TUBA4AP68366 448 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 ERV3-1Q14264 604 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 RAB39AQ14964 217 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 TRIM16LQ309B1 348 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF598Q86UK7 904 aaKnown RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 JAZF1Q86VZ6 243 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 PHF13Q86YI8 300 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 XAGE5Q8WWM1 108 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 GLYATL1Q969I3 302 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 TESCQ96BS2 214 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 RNFT2Q96EX2 444 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 OR6C1Q96RD1 312 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 SLC46A2Q9BY10 475 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CRISPLD2Q9H0B8 497 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 SPEF2Q9C093 1822 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 C2orf78A6NCI8 922 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 IL7RP16871 459 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 RORAP35398 523 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 HOXD12P35452 270 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 SERINC3Q13530 473 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 GPRIN3Q6ZVF9 776 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 USP30Q70CQ3 517 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CHERPQ8IWX8 916 aaKnown RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 NLGN4XQ8N0W4 816 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 IQCKQ8N0W5 287 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 PIK3C3Q8NEB9 887 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 NECAB3Q96P71 396 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 MYADMQ96S97 322 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 EFCAB11Q9BUY7 163 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms