RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 KLLNB2CW77 178 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 G3V2L1 256 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 H0YAE9 185 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 PHOX2AO14813 284 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 TEX28O15482 410 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 CEACAM4O75871 244 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 BAIAP3O94812 1187 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 CDH18Q13634 790 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 RNF212Q495C1 297 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 ZFAND4Q86XD8 727 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 MARCH9Q86YJ5 346 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 LINC00346Q8IVM7 164 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 METTL4Q8N3J2 472 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 OR10S1Q8NGN2 331 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 C4orf45Q96LM5 186 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 LPAR4Q99677 370 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 MAK16Q9BXY0 300 aaKnown RBP3.25□□□□□ -1.89
CD44-239ENST00000639002 FAM49AQ9H0Q0 323 aaPredicted RBP3.25□□□□□ -1.89
CD44-239ENST00000639002 GHITMQ9H3K2 345 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 MYNNQ9NPC7 610 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 B3GAT2Q9NPZ5 323 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 CRNNQ9UBG3 495 aaPredicted RBP3.25□□□□□ -1.89
CD44-239ENST00000639002 ABT1Q9ULW3 272 aaKnown RBP3.25□□□□□ -1.89
CD44-239ENST00000639002 NOTCH2Q04721 2471 aa3.25□□□□□ -1.89
CD44-239ENST00000639002 A0A087WUV0 522 aaPredicted RBP3.24□□□□□ -1.89
CD44-239ENST00000639002 TRBV5-5A0A0J9YX44 114 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 A6NCN8 305 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 A8MXK9 166 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 NPIPB9F8W1W9 429 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 SNAP91O60641 907 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 RPL35AP18077 110 aaKnown RBP3.24□□□□□ -1.89
CD44-239ENST00000639002 PDHA2P29803 388 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 HOXD13P35453 343 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 RXRGP48443 463 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 TAB1Q15750 504 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 FAM198BQ6UWH4 519 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 MAATS1Q7Z4T9 603 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 SLC37A3Q8NCC5 494 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 SYN2Q92777 582 aaPredicted RBP3.24□□□□□ -1.89
CD44-239ENST00000639002 SLAMF9Q96A28 289 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 SPACA9Q96E40 222 aaPredicted RBP3.24□□□□□ -1.89
CD44-239ENST00000639002 THOC1Q96FV9 657 aaKnown RBP3.24□□□□□ -1.89
CD44-239ENST00000639002 C2orf48Q96LS8 159 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 C1orf147Q96MC9 270 aaPredicted RBP3.24□□□□□ -1.89
CD44-239ENST00000639002 MAP3K3Q99759 626 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 HOXD1Q9GZZ0 328 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 PARLQ9H300 379 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 DPP3Q9NY33 737 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 ZNF69Q9UC07 566 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 R4GN57 208 aa3.24□□□□□ -1.89
CD44-239ENST00000639002 A0A1W2PPQ1 181 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 ARPC2O15144 300 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 ENTPD3O75355 529 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 CD27P26842 260 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 PTGER4P35408 488 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 CLCN4P51793 760 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 MAPK12P53778 367 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 IRX4P78413 519 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 TMEM132DQ14C87 1099 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 GPR33Q49SQ1 333 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 HIGD2BQ4VC39 106 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 IL17RELQ6ZVW7 336 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 ADGRA1Q86SQ6 560 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 LGI2Q8N0V4 545 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 C17orf53Q8N3J3 647 aaPredicted RBP3.23□□□□□ -1.89
CD44-239ENST00000639002 OR7A2PQ8NGA2 310 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 ZNF622Q969S3 477 aaKnown RBP eCLIP3.23□□□□□ -1.89
CD44-239ENST00000639002 SLC22A18Q96BI1 424 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 SFXN2Q96NB2 322 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 TUBB1Q9H4B7 451 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 Q9H8V8 135 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 PRMT7Q9NVM4 692 aaPredicted RBP3.23□□□□□ -1.89
CD44-239ENST00000639002 C19orf25Q9UFG5 118 aaPredicted RBP3.23□□□□□ -1.89
CD44-239ENST00000639002 WDR83OSQ9Y284 106 aa3.23□□□□□ -1.89
CD44-239ENST00000639002 RSF1Q96T23 1441 aaPredicted RBP3.22□□□□□ -1.89
CD44-239ENST00000639002 SHISA9B4DS77 424 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 TFECO14948 347 aaPredicted RBP3.22□□□□□ -1.89
CD44-239ENST00000639002 ZBED4O75132 1171 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 MELTFP08582 738 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 GP9P14770 177 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 MTHFRP42898 656 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 OR3A2P47893 321 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 ZFP36L2P47974 494 aaKnown RBP3.22□□□□□ -1.89
CD44-239ENST00000639002 TRA2AQ13595 282 aaKnown RBP eCLIP3.22□□□□□ -1.89
CD44-239ENST00000639002 PTPN14Q15678 1187 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 FAM189A2Q15884 450 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 MCMDC2Q4G0Z9 681 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 NOTUMQ6P988 496 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 FAM131BQ86XD5 332 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 OR10Q1Q8NGQ4 319 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 GOLPH3LQ9H4A5 285 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 HEXA-AS1Q9H8Q6 139 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 GDE1Q9NZC3 331 aa3.22□□□□□ -1.89
CD44-239ENST00000639002 LOC100509620A0A075B734 347 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 IGHV4-30-2A0A087WSY4 118 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 A0A1W2PPM1 405 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 O00370 1275 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 LRCH4O75427 683 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 KRT33AO76009 404 aa3.21□□□□□ -1.9
CD44-239ENST00000639002 DNA2P51530 1060 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms