RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 F7P08709 466 aaPredicted RBP15.41■□□□□ 0.06
CLN3-246ENST00000636228 ZGLP1P0C6A0 271 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 RPS3P23396 243 aaKnown RBP eCLIP15.41■□□□□ 0.064e-6■■□□□ 12.9
CLN3-246ENST00000636228 ARNTP27540 789 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 KCNJ1P48048 391 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 TSTA3Q13630 321 aaPredicted RBP15.41■□□□□ 0.06
CLN3-246ENST00000636228 ZNF169Q14929 603 aaPredicted RBP15.41■□□□□ 0.06
CLN3-246ENST00000636228 SUSD1Q6UWL2 747 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 RAB42Q8N4Z0 105 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 RNF10Q8N5U6 811 aaKnown RBP15.41■□□□□ 0.06
CLN3-246ENST00000636228 PEX13Q92968 403 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 MIEF2Q96C03 454 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 C10orf90Q96M02 699 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 DPH7Q9BTV6 452 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 YIPF2Q9BWQ6 316 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 EPS8L2Q9H6S3 715 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 ENAMQ9NRM1 1142 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 SYBUQ9NX95 663 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 IL1RAPL1Q9NZN1 696 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 C3orf18Q9UK00 162 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 FAM169AQ9Y6X4 670 aa15.41■□□□□ 0.06
CLN3-246ENST00000636228 TCRBV7S3A2A0A539 114 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 KPNA5O15131 536 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 TSFMP43897 325 aaKnown RBP15.4■□□□□ 0.06
CLN3-246ENST00000636228 NPY2RP49146 381 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 OCA2Q04671 838 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 ACSBG2Q5FVE4 666 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 EEF1AKMT2Q5JPI9 291 aaKnown RBP15.4■□□□□ 0.06
CLN3-246ENST00000636228 MEI1Q5TIA1 1274 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 FAAH2Q6GMR7 532 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 ISLR2Q6UXK2 745 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 RNF44Q7L0R7 432 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 GSTA5Q7RTV2 222 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 LRRC6Q86X45 466 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 OR1N1Q8NGS0 311 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 HMGCLL1Q8TB92 370 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 FAR1Q8WVX9 515 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 FOPNLQ96NB1 174 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 IL22Q9GZX6 179 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 PLA2G3Q9NZ20 509 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 BFARQ9NZS9 450 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 ZNF282Q9UDV7 671 aaPredicted RBP15.4■□□□□ 0.06
CLN3-246ENST00000636228 CRYL1Q9Y2S2 319 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 KLK4Q9Y5K2 254 aa15.4■□□□□ 0.06
CLN3-246ENST00000636228 OR2A25A4D2G3 310 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 H0YGG7 62 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 MAP2K7O14733 419 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 HPP00738 406 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 F10P00742 488 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 ERVK-10P10266 1014 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 ACPPP15309 386 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 CHRM3P20309 590 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 FBLP22087 321 aaKnown RBP15.39■□□□□ 0.05
CLN3-246ENST00000636228 CMPK1P30085 196 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 CCNFP41002 786 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 CARSP49589 748 aaKnown RBP15.39■□□□□ 0.05
CLN3-246ENST00000636228 ARF3P61204 181 aaPredicted RBP15.39■□□□□ 0.05
CLN3-246ENST00000636228 SRSF11Q05519 484 aaKnown RBP15.39■□□□□ 0.05
CLN3-246ENST00000636228 EEF1A2Q05639 463 aaKnown RBP15.39■□□□□ 0.05
CLN3-246ENST00000636228 MFAP5Q13361 173 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 TLR1Q15399 786 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 RPS6KA1Q15418 735 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 TRIP13Q15645 432 aaPredicted RBP15.39■□□□□ 0.05
CLN3-246ENST00000636228 CCNG2Q16589 344 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 HKDC1Q2TB90 917 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 PRTGQ2VWP7 1150 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 ATG9BQ674R7 924 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 PRMT9Q6P2P2 845 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 LPGAT1Q92604 370 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 CABS1Q96KC9 395 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 ZFYVE21Q9BQ24 234 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 TRIM56Q9BRZ2 755 aaKnown RBP15.39■□□□□ 0.05
CLN3-246ENST00000636228 EIF2B3Q9NR50 452 aaKnown RBP15.39■□□□□ 0.05
CLN3-246ENST00000636228 ABCF3Q9NUQ8 709 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 PTGFRNQ9P2B2 879 aa15.39■□□□□ 0.05
CLN3-246ENST00000636228 NSG1A0A0A6YYJ2 146 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 IGKV1-8A0A0C4DH67 115 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 ARHGEF33A8MVX0 844 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 AVILO75366 819 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 FKBP9O95302 570 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 MATN4O95460 622 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 CELA2AP08217 269 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 EMP2P54851 167 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 MUM1Q2TAK8 710 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 KLHL38Q2WGJ6 581 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 SDCCAG8Q86SQ7 713 aaPredicted RBP15.38■□□□□ 0.05
CLN3-246ENST00000636228 KBTBD2Q8IY47 623 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 MPP5Q8N3R9 675 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 SIRT6Q8N6T7 355 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 PPFIBP2Q8ND30 876 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 OR9A1PQ8NGU1 263 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 MAGEC3Q8TD91 643 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 BRIX1Q8TDN6 353 aaKnown RBP15.38■□□□□ 0.05
CLN3-246ENST00000636228 MAGEB10Q96LZ2 347 aaPredicted RBP15.38■□□□□ 0.05
CLN3-246ENST00000636228 LMF1Q96S06 567 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 KIFC1Q9BW19 673 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 MRPS30Q9NP92 439 aaKnown RBP15.38■□□□□ 0.05
CLN3-246ENST00000636228 SPATA7Q9P0W8 599 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 TRPC4Q9UBN4 977 aa15.38■□□□□ 0.05
CLN3-246ENST00000636228 DRG1Q9Y295 367 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms