RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 OR2B6P58173 313 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 IL10RBQ08334 325 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 SHQ1Q6PI26 577 aaKnown RBP17.85■□□□□ 0.45
UPF1-210ENST00000600689 ANGPTL8Q6UXH0 198 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 FAM151BQ6UXP7 276 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 RTN4RL1Q86UN2 441 aaPredicted RBP17.85■□□□□ 0.45
UPF1-210ENST00000600689 FAM217AQ8IXS0 508 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 BBS2Q9BXC9 721 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 RAD18Q9NS91 495 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 MARCH2Q9P0N8 246 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 FAM8A1Q9UBU6 413 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 M0R082 166 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 CA12O43570 354 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 PRAMEF12O95522 483 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 SLC19A1P41440 591 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 RPS24P62847 133 aaKnown RBP17.85■□□□□ 0.45
UPF1-210ENST00000600689 RFX4Q33E94 735 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 ABT1Q9ULW3 272 aaKnown RBP17.85■□□□□ 0.45
UPF1-210ENST00000600689 TLR6Q9Y2C9 796 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 NLRC5Q86WI3 1866 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 MICAL3Q7RTP6 2002 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 PABPN1LA6NDY0 278 aaKnown RBP17.85■□□□□ 0.45
UPF1-210ENST00000600689 NOTOA8MTQ0 251 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 TNFRSF10BO14763 440 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 CCSAPQ6IQ19 270 aaPredicted RBP17.85■□□□□ 0.45
UPF1-210ENST00000600689 CACTIN-AS1Q8N1I8 211 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 LKAAEAR1Q8TD35 194 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 CLSTN3Q9BQT9 956 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 SP140LQ9H930 580 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 ZNF221Q9UK13 617 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 RFXANKO14593 260 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 APOA1P02647 267 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 OPN1SWP03999 348 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 BCL7AQ4VC05 210 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 C16orf59Q7L2K0 433 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 ENTHD1Q8IYW4 607 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 TEX26Q8N6G2 289 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 LILRB4Q8NHJ6 448 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 SH3GL1Q99961 368 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 CDADC1Q9BWV3 514 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 THUMPD1Q9NXG2 353 aaKnown RBP17.84■□□□□ 0.45
UPF1-210ENST00000600689 TMEM88BA6NKF7 163 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 CHRM5P08912 532 aaPredicted RBP17.84■□□□□ 0.45
UPF1-210ENST00000600689 LPOP22079 712 aaPredicted RBP17.84■□□□□ 0.45
UPF1-210ENST00000600689 DMC1Q14565 340 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 SNAP47Q5SQN1 464 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 KIAA1614Q5VZ46 1190 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 AMER2Q8N7J2 671 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 APOLD1Q96LR9 279 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 TSEN34Q9BSV6 310 aaKnown RBP17.84■□□□□ 0.45
UPF1-210ENST00000600689 TRIM62Q9BVG3 475 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 REEP1Q9H902 201 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 AASDHPPTQ9NRN7 309 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 PTPRDP23468 1912 aa17.84■□□□□ 0.45
UPF1-210ENST00000600689 KMOO15229 486 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 DNAJB5O75953 348 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 MED26O95402 600 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 ALPIP09923 528 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 ACVR2AP27037 513 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 CA5AP35218 305 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 ATAD3CQ5T2N8 411 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 GALNT13Q8IUC8 556 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 TMEM132CQ8N3T6 1108 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 MAL2Q969L2 176 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 FBXO32Q969P5 355 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 HSH2DQ96JZ2 352 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 SUSD3Q96L08 255 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 RNF186Q9NXI6 227 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 PCDHGB6Q9Y5F9 930 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 PCDHGB1Q9Y5G3 927 aa17.83■□□□□ 0.45
UPF1-210ENST00000600689 LOC110117498-PIK3R3F6TDL0 507 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 TAPBPO15533 448 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 FABP3P05413 133 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 ITGAMP11215 1152 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 NPRL3Q12980 569 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 CAMK2GQ13555 558 aaPredicted RBP17.83■□□□□ 0.44
UPF1-210ENST00000600689 DDX39BQ13838 428 aaKnown RBP17.83■□□□□ 0.44
UPF1-210ENST00000600689 MED22Q15528 200 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 SBSNQ6UWP8 590 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 PRSS48Q7RTY5 328 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 STX19Q8N4C7 294 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 DEPDC7Q96QD5 511 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 MMP27Q9H306 513 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 CCSER2Q9H7U1 834 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 GPSM3Q9Y4H4 160 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 SMIM30A4D0T7 59 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 M0QX08 132 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 ZW10O43264 779 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 KLK8O60259 260 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 PRAMEF11O60813 436 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 NUDT7P0C024 238 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 PPP3CCP48454 512 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 RPS14P62263 151 aaKnown RBP17.83■□□□□ 0.44
UPF1-210ENST00000600689 SREBF2Q12772 1141 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 MBTPS1Q14703 1052 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 TRIM60Q495X7 471 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 SPANXN2Q5MJ10 180 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 NRARPQ7Z6K4 114 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 ZNF683Q8IZ20 524 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 APH1BQ8WW43 257 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms