RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 CTSVO60911 334 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 PSIP1O75475 530 aaKnown RBP13□□□□□ -0.33
TRIM28-211ENST00000597968 USP1O94782 785 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 CCNDBP1O95273 360 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 CATP04040 527 aaKnown RBP13□□□□□ -0.33
TRIM28-211ENST00000597968 ZGLP1P0C6A0 271 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 ERVK-10P10266 1014 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 EDN3P14138 238 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 GLRBP48167 497 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 EIF3BP55884 814 aaKnown RBP13□□□□□ -0.33
TRIM28-211ENST00000597968 VSX2P58304 361 aaPredicted RBP13□□□□□ -0.33
TRIM28-211ENST00000597968 ABATP80404 500 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 ZNF169Q14929 603 aaPredicted RBP13□□□□□ -0.33
TRIM28-211ENST00000597968 INAQ16352 499 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 TTLL9Q3SXZ7 439 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 CTSL3PQ5NE16 218 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 ATG9BQ674R7 924 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 ISLR2Q6UXK2 745 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 RIPOR1Q6ZS17 1223 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 LDB1Q86U70 411 aaPredicted RBP13□□□□□ -0.33
TRIM28-211ENST00000597968 FAM20CQ8IXL6 584 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 OR11G2Q8NGC1 345 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 OR9A1PQ8NGU1 263 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 DNAJB14Q8TBM8 379 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 STT3BQ8TCJ2 826 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 INPP5DQ92835 1189 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 MIEF2Q96C03 454 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 C19orf60Q96EN9 201 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 CRB3Q9BUF7 120 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 TGIF2Q9GZN2 237 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 C14orf105Q9NVL8 296 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 ERRFI1Q9UJM3 462 aaPredicted RBP13□□□□□ -0.33
TRIM28-211ENST00000597968 NOVA2Q9UNW9 492 aaKnown RBP13□□□□□ -0.33
TRIM28-211ENST00000597968 KLHL20Q9Y2M5 609 aa13□□□□□ -0.33
TRIM28-211ENST00000597968 SPTAN1Q13813 2472 aaKnown RBP13□□□□□ -0.33
TRIM28-211ENST00000597968 A0A1W2PPV9 198 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 EIF3FO00303 357 aaPredicted RBP12.99□□□□□ -0.33
TRIM28-211ENST00000597968 MAP2K7O14733 419 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 VAPBO95292 243 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 ZSCAN5DPP0CG00 497 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 MLNP12872 115 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 ICAM2P13598 275 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 ACPPP15309 386 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 EZRP15311 586 aaKnown RBP12.99□□□□□ -0.33
TRIM28-211ENST00000597968 ARNTP27540 789 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 NMBRP28336 390 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 PER3P56645 1201 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 PRDX1Q06830 199 aaKnown RBP12.99□□□□□ -0.33
TRIM28-211ENST00000597968 MFAP5Q13361 173 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 DSG2Q14126 1118 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 PRTGQ2VWP7 1150 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 TAX1BP1Q86VP1 789 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 SLC34A3Q8N130 599 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 C2orf73Q8N5S3 287 aaPredicted RBP12.99□□□□□ -0.33
TRIM28-211ENST00000597968 OTUD6BQ8N6M0 293 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 FAR1Q8WVX9 515 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 MFSD3Q96ES6 412 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 MIPEPQ99797 713 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 EBNA1BP2Q99848 306 aaKnown RBP12.99□□□□□ -0.33
TRIM28-211ENST00000597968 PLCD4Q9BRC7 762 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 TRIM56Q9BRZ2 755 aaKnown RBP12.99□□□□□ -0.33
TRIM28-211ENST00000597968 SOX17Q9H6I2 414 aaPredicted RBP12.99□□□□□ -0.33
TRIM28-211ENST00000597968 MRPS30Q9NP92 439 aaKnown RBP12.99□□□□□ -0.33
TRIM28-211ENST00000597968 LZTFL1Q9NQ48 299 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 CTSFQ9UBX1 484 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 ZC3H7BQ9UGR2 993 aaKnown RBP12.99□□□□□ -0.33
TRIM28-211ENST00000597968 NFS1Q9Y697 457 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 COMMD10Q9Y6G5 202 aa12.99□□□□□ -0.33
TRIM28-211ENST00000597968 SPTBN1Q01082 2364 aaKnown RBP12.99□□□□□ -0.33
TRIM28-211ENST00000597968 UNC79Q9P2D8 2635 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 NUP210LQ5VU65 1888 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 A0A0J9YVX5 310 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 E5RI56 91 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 FGGP02679 453 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 CCDC175P0C221 793 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 MYBL2P10244 700 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 ENO3P13929 434 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-211ENST00000597968 CHRM3P20309 590 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 FBLP22087 321 aaKnown RBP12.98□□□□□ -0.33
TRIM28-211ENST00000597968 HRH2P25021 359 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 CXCR2P25025 360 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 MCM3P25205 808 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 RPA3P35244 121 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-211ENST00000597968 OR1D4P47884 311 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 KLC1Q07866 573 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 FAM53BQ14153 422 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 FRMPD2BQ6IN97 320 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 LRRC8EQ6NSJ5 796 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 FBXO42Q6P3S6 717 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 CNSTQ6PJW8 725 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 NDUFAF7Q7L592 441 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 KCNMB4Q86W47 210 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 CILP2Q8IUL8 1156 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 KBTBD2Q8IY47 623 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 KCNJ9Q92806 393 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 THOC3Q96J01 351 aaKnown RBP12.98□□□□□ -0.33
TRIM28-211ENST00000597968 DPH7Q9BTV6 452 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 FAM129AQ9BZQ8 928 aa12.98□□□□□ -0.33
TRIM28-211ENST00000597968 ZBTB20Q9HC78 741 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-211ENST00000597968 MKKSQ9NPJ1 570 aaPredicted RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms