RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 NKAIN3Q8N8D7 197 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 ZNF248Q8NDW4 579 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 TBCKQ8TEA7 893 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 RAPGEF5Q92565 580 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 ANKRD9Q96BM1 317 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 PGM2Q96G03 612 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 ZNF354BQ96LW1 612 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 CCDC114Q96M63 670 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 ZNF317Q96PQ6 595 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 PLIN2Q99541 437 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 MTERF1Q99551 399 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 REEP2Q9BRK0 252 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 POLR3CQ9BUI4 534 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 MXD3Q9BW11 206 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 NT5C3AQ9H0P0 336 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 GANQ9H2C0 597 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 GHITMQ9H3K2 345 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 PPP1R3EQ9H7J1 279 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 BPIFA1Q9NP55 256 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 EIF2B3Q9NR50 452 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 BATF3Q9NR55 127 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 FAM207AQ9NSI2 230 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 PANK4Q9NVE7 773 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 EHD2Q9NZN4 543 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 TRAF3IP3Q9Y228 551 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 KCNK7Q9Y2U2 307 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 FAM96BQ9Y3D0 163 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 SRCAPQ6ZRS2 3230 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 GTPBP10A4D1E9 387 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 CFAP73A6NFT4 308 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 ZSCAN5CA6NGD5 496 aaPredicted RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 SERINC4A6NH21 518 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 CCT8L1PA6NM43 557 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 PGRMC1O00264 195 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 PDXKO00764 312 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 CETN3O15182 167 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 WDR1O75083 606 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 RTN2O75298 545 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 BAG3O95817 575 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 SCGB1D1O95968 90 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 APOA4P06727 396 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 GALTP07902 379 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 H2AFZP0C0S5 128 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 HSPA1AP0DMV8 641 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 HSPA1BP0DMV9 641 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 ACADMP11310 421 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 PAX1P15863 534 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 GCFC2P16383 781 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 KRTAP5-9P26371 169 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 PON1P27169 355 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 ABCD3P28288 659 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 TM4SF1P30408 202 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 ARL3P36405 182 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 CRKLP46109 303 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 CCNG1P51959 295 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 NAPAP54920 295 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 SLC8A3P57103 927 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 EFNB1P98172 346 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 PDE1BQ01064 536 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 GALNT2Q10471 571 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 SLMAPQ14BN4 828 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 TRADDQ15628 312 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 SNCBQ16143 134 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 GKAP1Q5VSY0 366 aaPredicted RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 DUPD1Q68J44 220 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 TTC19Q6DKK2 380 aaPredicted RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 SLC35E4Q6ICL7 350 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 ALKBH5Q6P6C2 394 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 CYB5D1Q6P9G0 228 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 MOXD1Q6UVY6 613 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 BBS12Q6ZW61 710 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 H2AFVQ71UI9 128 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 ZNF571Q7Z3V5 609 aaPredicted RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 NT5DC3Q86UY8 548 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 CCDC65Q8IXS2 484 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 CHCHD4Q8N4Q1 142 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 ANKRD13CQ8N6S4 541 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 CADM4Q8NFZ8 388 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 CHMP6Q96FZ7 201 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 RADILQ96JH8 1075 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 MBOAT7Q96N66 472 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 XPO6Q96QU8 1125 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 NAP1L3Q99457 506 aaPredicted RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 JPH2Q9BR39 696 aaPredicted RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 ERP44Q9BS26 406 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 FAM129AQ9BZQ8 928 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 ROPN1BQ9BZX4 212 aaPredicted RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 GLT8D2Q9H1C3 349 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 ROPN1Q9HAT0 212 aaPredicted RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 VEZTQ9HBM0 779 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 KCNMB3Q9NPA1 279 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 PPANQ9NQ55 473 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 ZDHHC18Q9NUE0 388 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 FAM118AQ9NWS6 357 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 CNOT8Q9UFF9 292 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 NIP7Q9Y221 180 aaKnown RBP eCLIP3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 DLGAP4Q9Y2H0 992 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 LOXL2Q9Y4K0 774 aa3.83□□□□□ -1.8
SMCHD1-208ENST00000583344 BAZ2AQ9UIF9 1905 aaKnown RBP3.82□□□□□ -1.8
SMCHD1-208ENST00000583344 LAMB1P07942 1786 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms