RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 FOXC2Q99958 501 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 TREX2Q9BQ50 279 aaPredicted RBP6.96□□□□□ -1.3
VPS4A-203ENST00000564399 UTP23Q9BRU9 249 aaKnown RBP6.96□□□□□ -1.3
VPS4A-203ENST00000564399 TUBB6Q9BUF5 446 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 C14orf105Q9NVL8 296 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 ANKRD10Q9NXR5 420 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 IMPACTQ9P2X3 320 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 TRHDEQ9UKU6 1024 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 SLC39A10Q9ULF5 831 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 CDC14AQ9UNH5 594 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 TLN2Q9Y4G6 2542 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 IGLV3-12A0A075B6K2 115 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 LOC105369274A0A096LPK9 316 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 TRBV5-4A0A0C4DH59 114 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 LOC102723532A0A0G2JNH3 316 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 SLC5A10A0PJK1 596 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 NKX2-6A6NCS4 301 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 FAM90A27PA6NNH2 459 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 TARM1B6A8C7 271 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 BHMG1C9JSJ3 638 aaPredicted RBP6.95□□□□□ -1.3
VPS4A-203ENST00000564399 QSOX1O00391 747 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 PRPF4O43172 522 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS4A-203ENST00000564399 CTSVO60911 334 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 RPN2P04844 631 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 TPOP07202 933 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 ANXA5P08758 320 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 CD46P15529 392 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 OC90Q02509 493 aaPredicted RBP6.95□□□□□ -1.3
VPS4A-203ENST00000564399 LTBQ06643 244 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 FOXD4Q12950 439 aaPredicted RBP6.95□□□□□ -1.3
VPS4A-203ENST00000564399 DSG2Q14126 1118 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 PCOLCEQ15113 449 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 OR1C1Q15619 314 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 CEBPEQ15744 281 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 DBN1Q16643 649 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 DNAJC21Q5F1R6 531 aaKnown RBP6.95□□□□□ -1.3
VPS4A-203ENST00000564399 ACER2Q5QJU3 275 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 FCRLBQ6BAA4 426 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 ITPRIPL1Q6GPH6 555 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 FRMPD2BQ6IN97 320 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 OR4N4Q8N0Y3 316 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 BEST3Q8N1M1 668 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 TMEM178AQ8NBL3 297 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 OR2L8Q8NGY9 312 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 ASB5Q8WWX0 329 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 METTL21AQ8WXB1 218 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 SYN2Q92777 582 aaPredicted RBP6.95□□□□□ -1.3
VPS4A-203ENST00000564399 HAUS1Q96CS2 278 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 MMABQ96EY8 250 aaPredicted RBP6.95□□□□□ -1.3
VPS4A-203ENST00000564399 DNAJC1Q96KC8 554 aaKnown RBP6.95□□□□□ -1.3
VPS4A-203ENST00000564399 ZNF354BQ96LW1 612 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 ANP32EQ9BTT0 268 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 PACSIN1Q9BY11 444 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 HES7Q9BYE0 225 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 UCK2Q9BZX2 261 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 ZNF700Q9H0M5 742 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 CXXC4Q9H2H0 198 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 KCNJ16Q9NPI9 418 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 DDX56Q9NY93 547 aaKnown RBP6.95□□□□□ -1.3
VPS4A-203ENST00000564399 KCNN3Q9UGI6 736 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 MKL2Q9ULH7 1088 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 PRSS21Q9Y6M0 314 aa6.95□□□□□ -1.3
VPS4A-203ENST00000564399 NSD1Q96L73 2696 aaPredicted RBP6.95□□□□□ -1.3
VPS4A-203ENST00000564399 ARID1AO14497 2285 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 FN1P02751 2386 aaKnown RBP6.94□□□□□ -1.3
VPS4A-203ENST00000564399 COL6A5A8TX70 2615 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 LOC102723996A0A087X1L8 192 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 IGHV3-20A0A0C4DH32 117 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 A0A1W2PQ72 361 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 ASPDHA6ND91 283 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 H7C0C1 242 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 ADAM10O14672 748 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 SEC24DO94855 1032 aaPredicted RBP6.94□□□□□ -1.3
VPS4A-203ENST00000564399 SUN1O94901 812 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 FKBP9O95302 570 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 OR56A5P0C7T3 313 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 C8orf89P0DMQ9 161 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 FOSL1P15407 271 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 ZNF24P17028 368 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 IGFBP2P18065 325 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 ADRA1AP35348 466 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 CD96P40200 585 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 CDKN2BP42772 138 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 ATP5OP48047 213 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 HSPA14Q0VDF9 509 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 TUBA3CQ13748 450 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 FASTKQ14296 549 aaKnown RBP6.94□□□□□ -1.3
VPS4A-203ENST00000564399 SPARCL1Q14515 664 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 PRPSAP1Q14558 356 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 TAZQ16635 292 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 MEP1AQ16819 746 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 BTBD16Q32M84 506 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 FIGNQ5HY92 759 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 MFSD4BQ5TF39 518 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 LRRC38Q5VT99 294 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 TMEM211Q6ICI0 200 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 SPINK14Q6IE38 97 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 TUBA3EQ6PEY2 450 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 TTC23LQ6PF05 361 aa6.94□□□□□ -1.3
VPS4A-203ENST00000564399 RBM43Q6ZSC3 357 aaKnown RBP6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms