RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CHRNA10Q9GZZ6 450 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 SEMA6CQ9H3T2 930 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 ABCF3Q9NUQ8 709 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 TMEM184CQ9NVA4 438 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 OGFRQ9NZT2 677 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 PDP2Q9P2J9 529 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 CIDEBQ9UHD4 219 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 ANGPTL2Q9UKU9 493 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 ATXN7L1Q9ULK2 861 aaPredicted RBP8.91□□□□□ -0.98
LDLR-210ENST00000559340 CLCA2Q9UQC9 943 aa8.91□□□□□ -0.98
LDLR-210ENST00000559340 FOXO6A8MYZ6 492 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 TK2O00142 265 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 HGSO14964 777 aaPredicted RBP8.9□□□□□ -0.98
LDLR-210ENST00000559340 BIRC5O15392 142 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 TAPBPO15533 448 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 PRICKLE3O43900 615 aaPredicted RBP8.9□□□□□ -0.98
LDLR-210ENST00000559340 TRIM13O60858 407 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 DKK1O94907 266 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 ANKRD34CP0C6C1 535 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 MTHFD2P13995 350 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 NPPBP16860 134 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 GNAZP19086 355 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 IMPDH1P20839 514 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 CCKBRP32239 447 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 SLC6A12P48065 614 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 HSPA7P48741 367 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 DNAJB13P59910 316 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 TBPL1P62380 186 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 HERVK_113P63132 956 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 SHC2P98077 582 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 INSM1Q01101 510 aaPredicted RBP8.9□□□□□ -0.98
LDLR-210ENST00000559340 RELAQ04206 551 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 ZFP36L1Q07352 338 aaKnown RBP8.9□□□□□ -0.98
LDLR-210ENST00000559340 CDC16Q13042 620 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 EIF3IQ13347 325 aaKnown RBP8.9□□□□□ -0.98
LDLR-210ENST00000559340 LAPTM5Q13571 262 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 FASTKQ14296 549 aaKnown RBP8.9□□□□□ -0.98
LDLR-210ENST00000559340 PDK4Q16654 411 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 HIST2H2ACQ16777 129 aaPredicted RBP8.9□□□□□ -0.98
LDLR-210ENST00000559340 ZC3H12BQ5HYM0 836 aaKnown RBP8.9□□□□□ -0.98
LDLR-210ENST00000559340 PAGE2BQ5JRK9 111 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 SNAP47Q5SQN1 464 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 PHF19Q5T6S3 580 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 CDCP2Q5VXM1 449 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 HIST2H2AA3Q6FI13 130 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 FIGLAQ6QHK4 219 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 SUSD1Q6UWL2 747 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 DHRS13Q6UX07 377 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 MBOAT1Q6ZNC8 495 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 CDHR3Q6ZTQ4 885 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 FAM92BQ6ZTR7 304 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 BPHLQ86WA6 291 aaPredicted RBP8.9□□□□□ -0.98
LDLR-210ENST00000559340 NUDCD3Q8IVD9 361 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 SPNS2Q8IVW8 549 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 TRIM42Q8IWZ5 723 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 ARFGAP2Q8N6H7 521 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 SNX31Q8N9S9 440 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 PPFIBP2Q8ND30 876 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 OR2L3Q8NG85 312 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 OR2A1Q8NGT9 310 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 PPP1R14CQ8TAE6 165 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 SLC5A11Q8WWX8 675 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 N4BP2L2Q92802 583 aaPredicted RBP8.9□□□□□ -0.98
LDLR-210ENST00000559340 ATP6V1E2Q96A05 226 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 ARL8AQ96BM9 186 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 PHF21BQ96EK2 531 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 TCTN2Q96GX1 697 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 FAM111AQ96PZ2 611 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 MAP3K3Q99759 626 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 CMKLR1Q99788 373 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 SELENOSQ9BQE4 189 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 ERVK-6Q9BXR3 956 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 PITHD1Q9GZP4 211 aaPredicted RBP8.9□□□□□ -0.98
LDLR-210ENST00000559340 TWSG1Q9GZX9 223 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 DRC3Q9H069 523 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 PELI2Q9HAT8 420 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 PDE7BQ9NP56 450 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 ZNF446Q9NWS9 450 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 OXSMQ9NWU1 459 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 TOR4AQ9NXH8 423 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 SPHK1Q9NYA1 384 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 SEMA5BQ9P283 1151 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 COPG2Q9UBF2 871 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 TAC3Q9UHF0 121 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 SLC22A14Q9Y267 594 aa8.9□□□□□ -0.98
LDLR-210ENST00000559340 FRYLO94915 3013 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 IGHV5-10-1A0A0J9YXX1 117 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 A0A1W2PPV9 198 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 TMEM120BA0PK00 339 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 A8MT66 165 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 A8MU76 341 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 DLX3O60479 287 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 UGDHO60701 494 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 SASH3O75995 380 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 SUPT7LO94864 414 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 SNUPNO95149 360 aaKnown RBP8.89□□□□□ -0.99
LDLR-210ENST00000559340 MLYCDO95822 493 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 TOP3BO95985 862 aaKnown RBP8.89□□□□□ -0.99
LDLR-210ENST00000559340 THRAP10827 490 aa8.89□□□□□ -0.99
LDLR-210ENST00000559340 HOXB3P14651 431 aaPredicted RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms