RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.36□□□□□ -1.07
USP3-208ENST00000558285 STARD8Q92502 1023 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 BIRC8Q96P09 236 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 TRAPPC9Q96Q05 1148 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 TRIM31Q9BZY9 425 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 XKR8Q9H6D3 395 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 LHX9Q9NQ69 397 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 MTRF1LQ9UGC7 380 aaKnown RBP8.36□□□□□ -1.07
USP3-208ENST00000558285 TUBD1Q9UJT1 453 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 POLHQ9Y253 713 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 DHRS7Q9Y394 339 aa8.36□□□□□ -1.07
USP3-208ENST00000558285 HEMK1Q9Y5R4 338 aaPredicted RBP8.36□□□□□ -1.07
USP3-208ENST00000558285 IQCF5A8MTL0 148 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 ZSCAN9O15535 394 aaPredicted RBP8.35□□□□□ -1.07
USP3-208ENST00000558285 NIPSNAP2O75323 286 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 MATN4O95460 622 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 RAB40ALP0C0E4 278 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 FOLR1P15328 257 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 ARNTP27540 789 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 GRK3P35626 688 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 ELK3P41970 407 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 IL2P60568 153 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 CTBP1Q13363 440 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 DNASE1L3Q13609 305 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 GPR19Q15760 415 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 KLHL38Q2WGJ6 581 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 CTSL3PQ5NE16 218 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 THEMIS2Q5TEJ8 643 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 PWWP2BQ6NUJ5 590 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 C8orf74Q6P047 294 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 RAB43Q86YS6 212 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 CNTN4Q8IWV2 1026 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 SYTL1Q8IYJ3 562 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 MREGQ8N565 214 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 NAT14Q8WUY8 206 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 APOBEC4Q8WW27 367 aaKnown RBP8.35□□□□□ -1.07
USP3-208ENST00000558285 RERGQ96A58 199 aaPredicted RBP8.35□□□□□ -1.07
USP3-208ENST00000558285 ZNF501Q96CX3 271 aaPredicted RBP8.35□□□□□ -1.07
USP3-208ENST00000558285 MED8Q96G25 268 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 AARSD1Q9BTE6 412 aaKnown RBP8.35□□□□□ -1.07
USP3-208ENST00000558285 APMAPQ9HDC9 416 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 FBXO6Q9NRD1 293 aaPredicted RBP8.35□□□□□ -1.07
USP3-208ENST00000558285 NDOR1Q9UHB4 597 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 SNX7Q9UNH6 387 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 CHMP2BQ9UQN3 213 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 C15orf41Q9Y2V0 281 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 PCDHGA6Q9Y5G7 932 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 ADAMTS20P59510 1910 aa8.35□□□□□ -1.07
USP3-208ENST00000558285 MEN1O00255 615 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 PSIP1O75475 530 aaKnown RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 ENO2P09104 434 aaPredicted RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 ST6GAL1P15907 406 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 PHBP35232 272 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 CARSP49589 748 aaKnown RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 RRADP55042 308 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 AP1S2P56377 157 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 SKP1P63208 163 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 CDC20Q12834 499 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 TSTA3Q13630 321 aaPredicted RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 KCNAB1Q14722 419 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 CYP2A13Q16696 494 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 CMPK2Q5EBM0 449 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 DENND6AQ8IWF6 608 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 ZBED8Q8IZ13 594 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 NKAPQ8N5F7 415 aaKnown RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 CCDC138Q96M89 665 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 OR2A14Q96R47 310 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 CCT8L2Q96SF2 557 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 GPR21Q99679 349 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 SPRY4Q9C004 299 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 TWSG1Q9GZX9 223 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 CENPHQ9H3R5 247 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 NOP53Q9NZM5 478 aaKnown RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 CROTQ9UKG9 612 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 NXT1Q9UKK6 140 aaKnown RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 CDC14AQ9UNH5 594 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 NOVA2Q9UNW9 492 aaKnown RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 CDYLQ9Y232 598 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 COL27A1Q8IZC6 1860 aaPredicted RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 MKRN2OSH3BPM6 223 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 PEX12O00623 359 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 CREG1O75629 220 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 NTRK1P04629 796 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 PTPN4P29074 926 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 STX2P32856 288 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 MDH1P40925 334 aaKnown RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 CLCN7P51798 805 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 CCNG1P51959 295 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 PNLIPRP1P54315 467 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 SH3BGRP55822 239 aaPredicted RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 PPP1CAP62136 330 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 DCDP81605 110 aaKnown RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 DYNC1I2Q13409 638 aaKnown RBP8.34□□□□□ -1.07
USP3-208ENST00000558285 NAB1Q13506 487 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 BLMHQ13867 455 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 NDUFA9Q16795 377 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 IRAK1BP1Q5VVH5 260 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 C16orf46Q6P387 395 aa8.34□□□□□ -1.07
USP3-208ENST00000558285 NAPRTQ6XQN6 538 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms