RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 CSTF2P33240 577 aaKnown RBP eCLIP13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 SLC6A12P48065 614 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 ZFP36L1Q07352 338 aaKnown RBP13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 TARDBPQ13148 414 aaKnown RBP eCLIP13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 FOXR1Q6PIV2 292 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 ZYG11AQ6WRX3 759 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 DGLUCYQ7Z3D6 616 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 PRSS42Q7Z5A4 293 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 C17orf64Q86WR6 236 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 TMPRSS12Q86WS5 348 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 FAM129CQ86XR2 697 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 TLCD1Q96CP7 247 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 OR4K3Q96R72 315 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 SH3GL2Q99962 352 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 HAUS8Q9BT25 410 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 DPH7Q9BTV6 452 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 PITPNM3Q9BZ71 974 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 ACSS2Q9NR19 701 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 DNAJC11Q9NVH1 559 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 CUEDC1Q9NWM3 386 aaPredicted RBP13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 AKAP7Q9P0M2 348 aaPredicted RBP13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 MID2Q9UJV3 735 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 SH2B3Q9UQQ2 575 aa13.53□□□□□ -0.24
VIPAS39-208ENST00000556412 KLK8O60259 260 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 ZBTB11O95625 1053 aaPredicted RBP13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 CDH1P12830 882 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 NPPBP16860 134 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 GGT5P36269 586 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 ARL1P40616 181 aaPredicted RBP13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 MLLT3P42568 568 aaPredicted RBP13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 PRDX1Q06830 199 aaKnown RBP13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 KCNAB1Q14722 419 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 C16orf72Q14CZ0 275 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 PDK4Q16654 411 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 LCTLQ6UWM7 567 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 LRRC70Q7Z2Q7 622 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 GALNT15Q8N3T1 639 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 TEX9Q8N6V9 391 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 C19orf47Q8N9M1 422 aaKnown RBP13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 RDH11Q8TC12 318 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 MGARPQ8TDB4 240 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 UBTD2Q8WUN7 234 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 TRAPPC9Q96Q05 1148 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 PAIP2Q9BPZ3 127 aaKnown RBP13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 MLXIPLQ9NP71 852 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 SSU72Q9NP77 194 aaKnown RBP13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 SLC6A20Q9NP91 592 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 TNPO3Q9Y5L0 923 aaKnown RBP13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 KCNE2Q9Y6J6 123 aa13.52□□□□□ -0.25
VIPAS39-208ENST00000556412 TMEM120BA0PK00 339 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 G3V2L1 256 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 H7BY64 318 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 K7EPI3 171 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 TOX3O15405 576 aaPredicted RBP13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 HYAL3O43820 417 aaPredicted RBP13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 CCKBRP32239 447 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 GRIA3P42263 894 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 HSD11B2P80365 405 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 ABATP80404 500 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 CDC16Q13042 620 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 TRA2AQ13595 282 aaKnown RBP eCLIP13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 ARHGAP22Q7Z5H3 698 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 TMPRSS11BQ86T26 416 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 CCNYL1Q8N7R7 359 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 DCBLD1Q8N8Z6 715 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 PPP4R1Q8TF05 950 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 SLC5A11Q8WWX8 675 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 NEIL2Q969S2 332 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 PRAP1Q96NZ9 151 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 CMKLR1Q99788 373 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 TWSG1Q9GZX9 223 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 ZNF768Q9H5H4 540 aaKnown RBP13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 PDP2Q9P2J9 529 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 COPG2Q9UBF2 871 aa13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 ARID1BQ8NFD5 2236 aaPredicted RBP13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 ARHGEF17Q96PE2 2063 aaPredicted RBP13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 ZFC3H1O60293 1989 aaKnown RBP13.51□□□□□ -0.25
VIPAS39-208ENST00000556412 HMGB1P1B2RPK0 211 aaPredicted RBP13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 E7EQ34 232 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 TMX2-CTNND1H3BSU7 103 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 STX16-NPEPL1H3BU86 382 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 STX16O14662 325 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 NRP2O60462 931 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 ANKRD34CP0C6C1 535 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 HGFP14210 728 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 EPB42P16452 691 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 PCBP2Q15366 365 aaKnown RBP eCLIP13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 ZIC1Q15915 447 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 DEFB110Q30KQ9 67 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 HSP90B2PQ58FF3 399 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 CATSPEREQ5SY80 951 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 FIGLAQ6QHK4 219 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 RPS27LQ71UM5 84 aaKnown RBP13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 SLC22A9Q8IVM8 553 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 C10orf107Q8IVU9 208 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 AGBL5Q8NDL9 886 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 CCDC126Q96EE4 140 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 MOCOSQ96EN8 888 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 TMEM237Q96Q45 408 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 MECRQ9BV79 373 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms