RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 SP3Q02447 781 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 LMOD3Q0VAK6 560 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 PLA2G7Q13093 441 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 IKQ13123 557 aaPredicted RBP4.4□□□□□ -1.71
PRPF39-209ENST00000556353 GPR17Q13304 367 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 P2RY6Q15077 328 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 TEAD2Q15562 447 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 ASTE1Q2TB18 679 aaPredicted RBP4.4□□□□□ -1.71
PRPF39-209ENST00000556353 HSP90AB3PQ58FF7 597 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 ZNF613Q6PF04 617 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 KLHL35Q6PF15 583 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 CORO6Q6QEF8 472 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 Q6ZSR9 355 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 USP50Q70EL3 339 aaPredicted RBP4.4□□□□□ -1.71
PRPF39-209ENST00000556353 G2E3Q7L622 706 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 OTUD6BQ8N6M0 293 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 ANKRD52Q8NB46 1076 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 TMEM178AQ8NBL3 297 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 TBC1D16Q8TBP0 767 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 FAM222BQ8WU58 562 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 CAPNS2Q96L46 248 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 CMTM3Q96MX0 182 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 KAT14Q9H8E8 782 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 ABT1Q9ULW3 272 aaKnown RBP4.4□□□□□ -1.71
PRPF39-209ENST00000556353 AK9Q5TCS8 1911 aa4.4□□□□□ -1.71
PRPF39-209ENST00000556353 MUC3AQ02505 3323 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 PHIPQ8WWQ0 1821 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 MGAMO43451 1857 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 A0A1W2PRB8 838 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 E9PQ18 207 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 ECE2O60344 883 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 BBOX1O75936 387 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 HSP90AA1P07900 732 aaKnown RBP4.39□□□□□ -1.71
PRPF39-209ENST00000556353 SNRPEP62304 92 aaKnown RBP4.39□□□□□ -1.71
PRPF39-209ENST00000556353 DEFB115Q30KQ5 88 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 CYP4A22Q5TCH4 519 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 TMEM154Q6P9G4 183 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 HSD17B8Q92506 261 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 C18orf12Q96KH6 178 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 SGK494Q96LW2 274 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 SYT15Q9BQS2 421 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 MXD3Q9BW11 206 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 UNC45AQ9H3U1 944 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 HHATLQ9HCP6 504 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 ACKR4Q9NPB9 350 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 DBF4Q9UBU7 674 aaPredicted RBP4.39□□□□□ -1.71
PRPF39-209ENST00000556353 SWAP70Q9UH65 585 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 DOCK2Q92608 1830 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 ATAD5Q96QE3 1844 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 REV3LO60673 3130 aa4.39□□□□□ -1.71
PRPF39-209ENST00000556353 MYH2Q9UKX2 1941 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 MYO1GB0I1T2 1018 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 ATP6V0E1O15342 81 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 EPB41L2O43491 1005 aaKnown RBP4.38□□□□□ -1.71
PRPF39-209ENST00000556353 CDC123O75794 336 aaPredicted RBP4.38□□□□□ -1.71
PRPF39-209ENST00000556353 UFL1O94874 794 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 CHMP24386 653 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 NMBRP28336 390 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 SNX16P57768 344 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 HNRNPDQ14103 355 aaKnown RBP4.38□□□□□ -1.71
PRPF39-209ENST00000556353 WDR43Q15061 677 aaKnown RBP eCLIP4.38□□□□□ -1.71
PRPF39-209ENST00000556353 ALFQ53S48 1182 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 DCAF10Q5QP82 559 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 SPAG16Q8N0X2 631 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 OR1J1Q8NGS3 322 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 SUSD6Q92537 303 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 MTERF3Q96E29 417 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 MAGED4Q96JG8 741 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 AGAP3Q96P47 875 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 TRAF4Q9BUZ4 470 aaPredicted RBP4.38□□□□□ -1.71
PRPF39-209ENST00000556353 ABHD6Q9BV23 337 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 FGFBP2Q9BYJ0 223 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 P2RY12Q9H244 342 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 PNNQ9H307 717 aaKnown RBP4.38□□□□□ -1.71
PRPF39-209ENST00000556353 INTS9Q9NV88 658 aaKnown RBP4.38□□□□□ -1.71
PRPF39-209ENST00000556353 HYPKQ9NX55 129 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 NPAP1Q9NZP6 1156 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 ORC3Q9UBD5 711 aaPredicted RBP4.38□□□□□ -1.71
PRPF39-209ENST00000556353 ASIC3Q9UHC3 531 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 AMACRQ9UHK6 382 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 PCDHGA5Q9Y5G8 931 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 FANCIQ9NVI1 1328 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 ALPK3Q96L96 1907 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 MYH15Q9Y2K3 1946 aa4.38□□□□□ -1.71
PRPF39-209ENST00000556353 SIPA1L1O43166 1804 aa4.37□□□□□ -1.71
PRPF39-209ENST00000556353 FOCADQ5VW36 1801 aa4.37□□□□□ -1.71
PRPF39-209ENST00000556353 FRMD3A2A2Y4 597 aa4.37□□□□□ -1.71
PRPF39-209ENST00000556353 PI4KAP2A4QPH2 592 aa4.37□□□□□ -1.71
PRPF39-209ENST00000556353 SERINC4A6NH21 518 aa4.37□□□□□ -1.71
PRPF39-209ENST00000556353 TPPPO94811 219 aa4.37□□□□□ -1.71
PRPF39-209ENST00000556353 PIGNO95427 931 aa4.37□□□□□ -1.71
PRPF39-209ENST00000556353 TBX18O95935 607 aa4.37□□□□□ -1.71
PRPF39-209ENST00000556353 PCCAP05165 728 aaPredicted RBP4.37□□□□□ -1.71
PRPF39-209ENST00000556353 LAMP2P13473 410 aa4.37□□□□□ -1.71
PRPF39-209ENST00000556353 PAX3P23760 479 aa4.37□□□□□ -1.71
PRPF39-209ENST00000556353 ARL3P36405 182 aa4.37□□□□□ -1.71
PRPF39-209ENST00000556353 ANP32AP39687 249 aaKnown RBP4.37□□□□□ -1.71
PRPF39-209ENST00000556353 RPS8P62241 208 aaKnown RBP4.37□□□□□ -1.71
PRPF39-209ENST00000556353 CRYMQ14894 314 aa4.37□□□□□ -1.71
PRPF39-209ENST00000556353 TAF13Q15543 124 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms