RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 ASB1Q9Y576 335 aa11.8□□□□□ -0.52
SHMT2-209ENST00000553949 TNPO3Q9Y5L0 923 aaKnown RBP11.8□□□□□ -0.52
SHMT2-209ENST00000553949 PCNX2A6NKB5 2137 aa11.8□□□□□ -0.52
SHMT2-209ENST00000553949 IGHV5-51A0A0C4DH38 117 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 SLC9B1P1A6NJY1 282 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 HMGB1P1B2RPK0 211 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-209ENST00000553949 TM9SF1O15321 606 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 CCNT2O60583 730 aaKnown RBP11.79□□□□□ -0.52
SHMT2-209ENST00000553949 CSO75390 466 aaKnown RBP11.79□□□□□ -0.52
SHMT2-209ENST00000553949 ZWINTO95229 277 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 SIX3O95343 332 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-209ENST00000553949 ANKRD34CP0C6C1 535 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 CPA3P15088 417 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 PVRP15151 417 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 CMPK1P30085 196 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 CCKBRP32239 447 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 PRKAA2P54646 552 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 INHBCP55103 352 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 YBX1P67809 324 aaKnown RBP11.79□□□□□ -0.52
SHMT2-209ENST00000553949 ABATP80404 500 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 TRA2AQ13595 282 aaKnown RBP eCLIP11.79□□□□□ -0.52
SHMT2-209ENST00000553949 MPP2Q14168 576 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 PCBP2Q15366 365 aaKnown RBP eCLIP11.79□□□□□ -0.52
SHMT2-209ENST00000553949 ISXQ2M1V0 245 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 ARHGAP22Q7Z5H3 698 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 RAB44Q7Z6P3 723 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-209ENST00000553949 TMPRSS12Q86WS5 348 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 SLC22A9Q8IVM8 553 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 DCBLD1Q8N8Z6 715 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 CCDC126Q96EE4 140 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 TRAPPC9Q96Q05 1148 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 KLHL25Q9H0H3 589 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 ZNF768Q9H5H4 540 aaKnown RBP11.79□□□□□ -0.52
SHMT2-209ENST00000553949 MRPS30Q9NP92 439 aaKnown RBP11.79□□□□□ -0.52
SHMT2-209ENST00000553949 DNAJC11Q9NVH1 559 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 COPG2Q9UBF2 871 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 SH2B3Q9UQQ2 575 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 KLHL20Q9Y2M5 609 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 DYRK1BQ9Y463 629 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 RP1P56715 2156 aa11.79□□□□□ -0.52
SHMT2-209ENST00000553949 IGKV1-8A0A0C4DH67 115 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 TMEM120BA0PK00 339 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 LRRC14BA6NHZ5 514 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 TMX2-CTNND1H3BSU7 103 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 K7EPI3 171 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 E2F3O00716 465 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 ZBTB11O95625 1053 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-209ENST00000553949 ST6GAL1P15907 406 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 EEF1DP29692 281 aaKnown RBP11.78□□□□□ -0.52
SHMT2-209ENST00000553949 GRIA3P42263 894 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 ETV4P43268 484 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 ID4P47928 161 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 SEPHS1P49903 392 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 SLC18A1P54219 525 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 HERVK_113P63132 956 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 CDC16Q13042 620 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 PCLAFQ15004 111 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 PDK4Q16654 411 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 METTL2BQ6P1Q9 378 aaKnown RBP11.78□□□□□ -0.52
SHMT2-209ENST00000553949 C17orf64Q86WR6 236 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 KMT5CQ86Y97 462 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 C10orf107Q8IVU9 208 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 CACTIN-AS1Q8N1I8 211 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 SNX31Q8N9S9 440 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 RCBTB1Q8NDN9 531 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 SLC5A11Q8WWX8 675 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 KLHL6Q8WZ60 621 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 NEIL2Q969S2 332 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 TMEM237Q96Q45 408 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 DPH7Q9BTV6 452 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 ERVK-6Q9BXR3 956 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 STRADBQ9C0K7 418 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 SLC6A20Q9NP91 592 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 OXSMQ9NWU1 459 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 GPRC5BQ9NZH0 403 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 OPTCQ9UBM4 332 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 KLK4Q9Y5K2 254 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 KCNE2Q9Y6J6 123 aa11.78□□□□□ -0.52
SHMT2-209ENST00000553949 H7BY64 318 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 HGSO14964 777 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-209ENST00000553949 PRAMEF10O60809 474 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 RPS17P08708 135 aaKnown RBP11.77□□□□□ -0.53
SHMT2-209ENST00000553949 CDH1P12830 882 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 JUPP14923 745 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 EPB42P16452 691 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 NELFEP18615 380 aaKnown RBP11.77□□□□□ -0.53
SHMT2-209ENST00000553949 GNAZP19086 355 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 EPORP19235 508 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 IMPDH1P20839 514 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 MAGP20916 626 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 HPDP32754 393 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-209ENST00000553949 PIK3CGP48736 1102 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 ARL4DP49703 201 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 DNAJB13P59910 316 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 HSD11B2P80365 405 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 TARDBPQ13148 414 aaKnown RBP eCLIP11.77□□□□□ -0.53
SHMT2-209ENST00000553949 GTF2H2Q13888 395 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 NAA25Q14CX7 972 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 C16orf72Q14CZ0 275 aa11.77□□□□□ -0.53
SHMT2-209ENST00000553949 ZIC1Q15915 447 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms