RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ANGPTL3Q9Y5C1 460 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PCDHGA6Q9Y5G7 932 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TRPV2Q9Y5S1 764 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PLXNB2O15031 1838 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PATJQ8NI35 1801 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 NINQ8N4C6 2090 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 DYTNA2CJ06 578 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ZSCAN5BA6NJL1 495 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 AKR7A2O43488 359 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 NTRK1P04629 796 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ENDOUP21128 410 aaKnown RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 CTSKP43235 329 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 PPP3CCP48454 512 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 HSPA7P48741 367 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 P2RX3P56373 397 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 HOXC5Q00444 222 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ACVR1Q04771 509 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF33AQ06730 810 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ZFP69Q49AA0 526 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 XKR4Q5GH76 650 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 SIGIRRQ6IA17 410 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 NEK5Q6P3R8 708 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 GALNT7Q86SF2 657 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 KLHDC9Q8NEP7 349 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 OR4K2Q8NGD2 314 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 OR56A4Q8NGH8 313 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 OR10T2Q8NGX3 314 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 VANGL1Q8TAA9 524 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 CD200R1Q8TD46 325 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 GTF3C2Q8WUA4 911 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 OR52E6Q96RD3 313 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 MCCC1Q96RQ3 725 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TSPAN18Q96SJ8 248 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 EGFL8Q99944 293 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ARPC5LQ9BPX5 153 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 COPS4Q9BT78 406 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 APOL5Q9BWW9 433 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 BARHL1Q9BZE3 327 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ROGDIQ9GZN7 287 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 NXF2Q9GZY0 626 aaKnown RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 NUAK2Q9H093 628 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ABCC13Q9NSE7 274 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TAS2R9Q9NYW1 312 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 FLRT1Q9NZU1 646 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 LRFN2Q9ULH4 789 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 KNL1Q8NG31 2342 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 A0A0D9SEW6 157 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 MOXD2PA6NHM9 499 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 SMLR1H3BR10 107 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 RPP40O75818 363 aaKnown RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 NPPAP01160 153 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 EIF2S1P05198 315 aaKnown RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 SERPINF2P08697 491 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 AKR1A1P14550 325 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 CASP9P55211 416 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 NKX3-2P78367 333 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF79Q15937 498 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TYSND1Q2T9J0 566 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 PARP15Q460N3 678 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 CYP27C1Q4G0S4 372 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ZC3H12BQ5HYM0 836 aaKnown RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 LRRC66Q68CR7 880 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 OR2T5Q6IEZ7 315 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TIGD7Q6NT04 549 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 KLHL17Q6TDP4 642 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 PAMR1Q6UXH9 720 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 C16orf59Q7L2K0 433 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 SLC46A3Q7Z3Q1 461 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TSEN54Q7Z6J9 526 aaKnown RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 CALHM3Q86XJ0 350 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 GPSM1Q86YR5 675 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TRIM48Q8IWZ4 208 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 OR8H2Q8N162 312 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 LPCAT1Q8NF37 534 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 OR2T29Q8NH02 315 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 GGHQ92820 318 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TADA1Q96BN2 335 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TRMT61AQ96FX7 289 aaKnown RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 SPATA17Q96L03 361 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 DEPDC7Q96QD5 511 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF382Q96SR6 550 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 BCL7BQ9BQE9 202 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 NUSAP1Q9BXS6 441 aaKnown RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 IPPKQ9H8X2 491 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 RRAGCQ9HB90 399 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 SCN3BQ9NY72 215 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TAS2R13Q9NYV9 303 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 MARCH2Q9P0N8 246 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 DOCK3Q8IZD9 2030 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 CCDC88CQ9P219 2028 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 SMIM30A4D0T7 59 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TAPBPO15533 448 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 LRRTM2O43300 516 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 KIAA0513O60268 411 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 SCO1O75880 301 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 PRAMEF12O95522 483 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 CRYZL1O95825 349 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 CSF2P04141 144 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 NUDT7P0C024 238 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ADORA3P0DMS8 318 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms