RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ZBTB5O15062 677 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 ADAMDEC1O15204 470 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 SLC7A4O43246 635 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 CYTH3O43739 400 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 JRKO75564 520 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 STAM2O75886 525 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 RECQL5O94762 991 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 ZWINTO95229 277 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 PLAUP00749 431 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 FAM90A13PP0C7W8 464 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 FAM90A24PP0C7X0 464 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 CBSLP0DN79 551 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 CD58P19256 250 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 TRIM21P19474 475 aaKnown RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 HLA-DPA1P20036 260 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 FBLP22087 321 aaKnown RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 ELAVL4P26378 380 aaKnown RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 HOXA9P31269 272 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 PCGF2P35227 344 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 IDUAP35475 653 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 CBSP35520 551 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 KRT2P35908 639 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 PRKCIP41743 596 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 NPY4RP50391 375 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 ARPP19P56211 112 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 TMPRSS3P57727 454 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 TAS2R40P59535 323 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 MRPS34P82930 218 aaKnown RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 SLC18A2Q05940 514 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 DSC1Q08554 894 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 AP1B1Q10567 949 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 CAPSQ13938 189 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 HNRNPDQ14103 355 aaKnown RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 KARSQ15046 597 aaKnown RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 PSMD5Q16401 504 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 UBE2SQ16763 222 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 C2orf76Q3KRA6 126 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 MMEL1Q495T6 779 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 ZNF362Q5T0B9 420 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 LYSMD4Q5XG99 296 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 KIAA0895LQ68EN5 471 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 DHRS7BQ6IAN0 325 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 TRAT1Q6PIZ9 186 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 CLEC18BQ6UXF7 455 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 PPP1R21Q6ZMI0 780 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 MSANTD1Q6ZTZ1 278 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 BTN2A1Q7KYR7 527 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 TFAP2DQ7Z6R9 452 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 SDCCAG8Q86SQ7 713 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 GLRX5Q86SX6 157 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 SERPINA11Q86U17 422 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 PRIMA1Q86XR5 153 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 MCEMP1Q8IX19 187 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 MMP21Q8N119 569 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 GUF1Q8N442 669 aaKnown RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 PARP16Q8N5Y8 322 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 ZBTB2Q8N680 514 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 PNLDC1Q8NA58 520 aaKnown RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 KBTBD3Q8NAB2 608 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 CLEC18CQ8NCF0 446 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 BEST2Q8NFU1 509 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 TSTD1Q8NFU3 115 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 OR14L1PQ8NHC6 308 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 MOSPD2Q8NHP6 518 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 PSMA8Q8TAA3 256 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 OSR1Q8TAX0 266 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 SLC9A6Q92581 669 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 FGF11Q92914 225 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 TBC1D31Q96DN5 1066 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 SEPT5Q99719 369 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 MGME1Q9BQP7 344 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 ACAT2Q9BWD1 397 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 LHPPQ9H008 270 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 MMP27Q9H306 513 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 EBF3Q9H4W6 596 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 TRPV4Q9HBA0 871 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 EPB41L5Q9HCM4 733 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 HPS4Q9NQG7 708 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 ZNF302Q9NR11 478 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 PLEKHB1Q9UF11 243 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 ARMCX3Q9UH62 379 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-208ENST00000551691 SLC24A2Q9UI40 661 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 ADAM28Q9UKQ2 775 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 CEPT1Q9Y6K0 416 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 KNL1Q8NG31 2342 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 PCDH15Q96QU1 1955 aa3.71□□□□□ -1.82
LIMA1-208ENST00000551691 F8P00451 2351 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 SPTBN1Q01082 2364 aaKnown RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 TSC2P49815 1807 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 PCNX1Q96RV3 2341 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 LOC102723996A0A087X1L8 192 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 A0A0A0MQY5 61 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 C1orf226A1L170 272 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 TRDMT1O14717 391 aaKnown RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 SYNCRIPO60506 623 aaKnown RBP3.7□□□□□ -1.82
LIMA1-208ENST00000551691 DAB1O75553 588 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 ESRRBO95718 433 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 ITGB6P18564 788 aa3.7□□□□□ -1.82
LIMA1-208ENST00000551691 EEF1B2P24534 225 aaKnown RBP3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms