RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 SYTL3Q4VX76 610 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 AGTRAPQ6RW13 159 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 RTL10Q7L3V2 364 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 LEMD2Q8NC56 503 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 NCLNQ969V3 563 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 TMEM159Q96B96 161 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 AP2M1Q96CW1 435 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 OR4K3Q96R72 315 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 MTERF1Q99551 399 aaKnown RBP17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 RAD9AQ99638 391 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 SH3GL3Q99963 347 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 STOX2Q9P2F5 926 aaPredicted RBP17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 DNAJB9Q9UBS3 223 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 KIAA1549LQ6ZVL6 1849 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 UGDHO60701 494 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 ATG13O75143 517 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 ALBP02768 609 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 RETP07949 1114 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 PRLHRP49683 370 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 MESP2Q0VG99 397 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 PCM1Q15154 2024 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 CLEC4FQ8N1N0 589 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 OR7A2PQ8NGA2 310 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 CSGALNACT1Q8TDX6 532 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 ADAMTS16Q8TE57 1224 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 MED8Q96G25 268 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 LRIG1Q96JA1 1093 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 MAGEB10Q96LZ2 347 aaPredicted RBP17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 CCM2Q9BSQ5 444 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 WRAP53Q9BUR4 548 aaKnown RBP17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 THEGQ9P2T0 379 aa17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 RSL24D1Q9UHA3 163 aaKnown RBP17.97■□□□□ 0.47
PRPF40B-208ENST00000548436 NUP210Q8TEM1 1887 aaPredicted RBP17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 G3V2T6 193 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 QSOX1O00391 747 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 RFXANKO14593 260 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 PER2O15055 1255 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 NPC1O15118 1278 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 TLL1O43897 1013 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 XYLBO75191 536 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 SERPINA1P01009 418 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 SRPRAP08240 638 aaKnown RBP17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 PDHA2P29803 388 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 SH3BGRP55822 239 aaPredicted RBP17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 CSTF3Q12996 717 aaKnown RBP17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 MTAPQ13126 283 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 SF1Q15637 639 aaKnown RBP17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 UGT8Q16880 541 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 TMEM220Q6QAJ8 160 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 ZDHHC13Q8IUH4 622 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 HS3ST5Q8IZT8 346 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 GLMNQ92990 594 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 CCDC138Q96M89 665 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 MUS81Q96NY9 551 aa17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 DDX18Q9NVP1 670 aaKnown RBP17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 THG1LQ9NWX6 298 aaKnown RBP17.96■□□□□ 0.47
PRPF40B-208ENST00000548436 WNT9AO14904 365 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 THRBP10828 461 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 PBLDP30039 288 aaPredicted RBP17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 KIR3DL1P43629 444 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 DDX39BQ13838 428 aaKnown RBP17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 ADNP2Q6IQ32 1131 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 FBXO46Q6PJ61 603 aaPredicted RBP17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 DOK6Q6PKX4 331 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 SYT12Q8IV01 421 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 ALDH16A1Q8IZ83 802 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 HCAR2Q8TDS4 363 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 PKP4Q99569 1192 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 REXO4Q9GZR2 422 aaKnown RBP17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 SMURF2Q9HAU4 748 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 SPATA6Q9NWH7 488 aaPredicted RBP17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 GULP1Q9UBP9 304 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 VPS29Q9UBQ0 182 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 ERVK-11Q9UQG0 969 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 COQ6Q9Y2Z9 468 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 C5orf42Q9H799 3197 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 KPNA3O00505 521 aaPredicted RBP17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 SLC9A3R1O14745 358 aaPredicted RBP17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 SPINT1O43278 529 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 SLC16A8O95907 504 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 HNRNPA1P09651 372 aaKnown RBP eCLIP17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 ADH5P11766 374 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 PRPS1L1P21108 318 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 IMPA1P29218 277 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 VASPP50552 380 aaPredicted RBP17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 CDK9P50750 372 aaKnown RBP17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 WNT3P56703 355 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 ABHD18Q0P651 414 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 PPP1R8Q12972 351 aaKnown RBP17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 ANKRD34AQ69YU3 496 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 ERAP2Q6P179 960 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 LPCAT2Q7L5N7 544 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 VN1R2Q8NFZ6 395 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 OR10Q1Q8NGQ4 319 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 BADQ92934 168 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 RSPRY1Q96DX4 576 aa17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 REXO5Q96IC2 774 aaKnown RBP17.95■□□□□ 0.46
PRPF40B-208ENST00000548436 SCN2BO60939 215 aa17.94■□□□□ 0.46
PRPF40B-208ENST00000548436 CATP04040 527 aaKnown RBP17.94■□□□□ 0.46
PRPF40B-208ENST00000548436 SHMT2P34897 504 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms