RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	NPPB	P16860	134 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	CSTF2	P33240	577 aa	Known RBP eCLIP	9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	GGT5	P36269	586 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	SLC6A12	P48065	614 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	PRKAA2	P54646	552 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	INHBC	P55103	352 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	PRDX1	Q06830	199 aa	Known RBP	9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	ASPH	Q12797	758 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	CDC16	Q13042	620 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	MPP2	Q14168	576 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	PUM1	Q14671	1186 aa	Known RBP eCLIP	9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	PCBP2	Q15366	365 aa	Known RBP eCLIP	9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	RBBP7	Q16576	425 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	PDK4	Q16654	411 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	SLC5A12	Q1EHB4	618 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	ZXDC	Q2QGD7	858 aa	Predicted RBP	9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	HES3	Q5TGS1	186 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	KIAA1614	Q5VZ46	1190 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	ICE2	Q659A1	982 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	LCTL	Q6UWM7	567 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	ZNF574	Q6ZN55	896 aa	Predicted RBP	9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	LRRC70	Q7Z2Q7	622 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	TMPRSS9	Q7Z410	1059 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	NUDCD3	Q8IVD9	361 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	C10orf107	Q8IVU9	208 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	RCBTB1	Q8NDN9	531 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	OR2L3	Q8NG85	312 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	OR2A1	Q8NGT9	310 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	SLC5A11	Q8WWX8	675 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	CCDC74B	Q96LY2	380 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	DEPDC7	Q96QD5	511 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	DPH7	Q9BTV6	452 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	CAPS2	Q9BXY5	557 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	STRADB	Q9C0K7	418 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	MED4	Q9NPJ6	270 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	ACSS2	Q9NR19	701 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	C1GALT1	Q9NS00	363 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	SNX7	Q9UNH6	387 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	CLCA2	Q9UQC9	943 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	PIKFYVE	Q9Y2I7	2098 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	LAMA1	P25391	3075 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	TMEM131	Q92545	1883 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	LRP4	O75096	1905 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545		H7BY64	318 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	PRICKLE3	O43900	615 aa	Predicted RBP	9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	TRIM13	O60858	407 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	CS	O75390	466 aa	Known RBP	9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	FKBP9	O95302	570 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	ZBTB11	O95625	1053 aa	Predicted RBP	9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	C9	P02748	559 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	CDH1	P12830	882 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	GNAZ	P19086	355 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	IMPDH1	P20839	514 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	MAG	P20916	626 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	ALDH3A1	P30838	453 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	GRIA3	P42263	894 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	LSS	P48449	732 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	SERPINB4	P48594	390 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	PIK3CG	P48736	1102 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	CCR8	P51685	355 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	NAGLU	P54802	743 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	CDH13	P55290	713 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	HERVK_113	P63132	956 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	YBX1	P67809	324 aa	Known RBP	9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	NFKB2	Q00653	900 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	IRF8	Q02556	426 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	GTF2H2	Q13888	395 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	NAA25	Q14CX7	972 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	XKR6	Q5GH73	641 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	TMTC4	Q5T4D3	741 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	GTF2H2C	Q6P1K8	395 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	FIGLA	Q6QHK4	219 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	PRSS42	Q7Z5A4	293 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	GOLGA7	Q7Z5G4	137 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	B3GNT8	Q7Z7M8	397 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	TMPRSS11B	Q86T26	416 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	MYLK4	Q86YV6	388 aa	Predicted RBP	9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	MDM1	Q8TC05	714 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	UBTD2	Q8WUN7	234 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	N4BP2L2	Q92802	583 aa	Predicted RBP	9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	PRAP1	Q96NZ9	151 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	TRAPPC9	Q96Q05	1148 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	OR4K3	Q96R72	315 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	MECR	Q9BV79	373 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	ERVK-6	Q9BXR3	956 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	NOL11	Q9H8H0	719 aa	Known RBP	9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	PDE7B	Q9NP56	450 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	SEMA4B	Q9NPR2	832 aa	Predicted RBP	9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	OXSM	Q9NWU1	459 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	DLL3	Q9NYJ7	618 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	ASB1	Q9Y576	335 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	WDR87	Q6ZQQ6	2873 aa		9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	MN1	Q10571	1320 aa	Predicted RBP	9.78	□□□□□ -0.84
CPSF7-221	ENST00000543545	PIEZO1	Q92508	2521 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	IGHV5-51	A0A0C4DH38	117 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	TOX3	O15405	576 aa	Predicted RBP	9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	PRAMEF10	O60809	474 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	KATNA1	O75449	491 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	BPGM	P07738	259 aa		9.77	□□□□□ -0.85

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