RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 SSR3Q9UNL2 185 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 PLCH1Q4KWH8 1693 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 FAM221BA6H8Z2 402 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 ITM2AO43736 263 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 CDH1P12830 882 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 DNAJB1P25685 340 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 CLDN10P78369 228 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 C1orf61Q13536 156 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 ZNF648Q5T619 568 aaPredicted RBP13.74□□□□□ -0.21
USP3-204ENST00000540797 DDI2Q5TDH0 399 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 OXR1Q8N573 874 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 PLA2G15Q8NCC3 412 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 FAM13CQ8NE31 585 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 ZIC5Q96T25 663 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 EBF4Q9BQW3 602 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 STRADBQ9C0K7 418 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 EHD3Q9NZN3 535 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 GJD2Q9UKL4 321 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 CAPN14A8MX76 684 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 AGPSO00116 658 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 SLC22A2O15244 555 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 C5AR1P21730 350 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 AHCYP23526 432 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 TGFBIQ15582 683 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 PUS10Q3MIT2 529 aaKnown RBP13.74□□□□□ -0.21
USP3-204ENST00000540797 SLC30A6Q6NXT4 461 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 ZNF527Q8NB42 609 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 OR51B5Q9H339 312 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 GPR34Q9UPC5 381 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 FAM149AA5PLN7 773 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 C2orf74A8MZ97 194 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 AXIN1O15169 862 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 OR1I1O60431 355 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 EBLN1P0CF75 366 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 PFKLP17858 780 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 GLDCP23378 1020 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 KCNC3Q14003 757 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 SCARB2Q14108 478 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 LPCAT4Q643R3 524 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 TMEM156Q8N614 296 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 NEK7Q8TDX7 302 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 ZDHHC12Q96GR4 267 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 PALMDQ9NP74 551 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 IL1RAPQ9NPH3 570 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 GNB5O14775 395 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 BCKDKO14874 412 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 AGR2O95994 175 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 DBTP11182 482 aaKnown RBP13.74□□□□□ -0.21
USP3-204ENST00000540797 PLGLB1Q02325 96 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 BNIP1Q12981 228 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 KLF1Q13351 362 aaPredicted RBP13.74□□□□□ -0.21
USP3-204ENST00000540797 FBXO43Q4G163 708 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 ARMC3Q5W041 872 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 GALNT7Q86SF2 657 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 SNRNP27Q8WVK2 155 aaKnown RBP13.74□□□□□ -0.21
USP3-204ENST00000540797 GPATCH1Q9BRR8 931 aaKnown RBP13.74□□□□□ -0.21
USP3-204ENST00000540797 CD244Q9BZW8 370 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 XKR8Q9H6D3 395 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 CMTM6Q9NX76 183 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 DAPK2Q9UIK4 370 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 HCN1O60741 890 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 COQ9O75208 318 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 GADD45GO95257 159 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 JUNDP17535 347 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 FOXN2P32314 431 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 RPS13P62277 151 aaKnown RBP13.74□□□□□ -0.21
USP3-204ENST00000540797 RHAGQ02094 409 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 ZNF311Q5JNZ3 666 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 TMEM198Q66K66 360 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 PEG10Q86TG7 708 aaKnown RBP13.74□□□□□ -0.21
USP3-204ENST00000540797 ZDHHC21Q8IVQ6 265 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 OR5AK3PQ8NH89 298 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 GTPBP3Q969Y2 492 aaKnown RBP13.74□□□□□ -0.21
USP3-204ENST00000540797 HCFC1R1Q9NWW0 138 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 DHRS7Q9Y394 339 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 TMED5Q9Y3A6 229 aa13.74□□□□□ -0.21
USP3-204ENST00000540797 PKD1L3Q7Z443 1732 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 OR5K4A6NMS3 321 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 LDB2O43679 373 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 VEGFDO43915 354 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 ECDO95905 644 aaPredicted RBP13.73□□□□□ -0.21
USP3-204ENST00000540797 WDR4P57081 412 aaKnown RBP13.73□□□□□ -0.21
USP3-204ENST00000540797 GPR68Q15743 365 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 SGCBQ16585 318 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 OR4F3Q6IEY1 312 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 TPSD1Q9BZJ3 242 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 CLK4Q9HAZ1 481 aaKnown RBP13.73□□□□□ -0.21
USP3-204ENST00000540797 POPDC3Q9HBV1 291 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 MOCS1Q9NZB8 636 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 C19orf25Q9UFG5 118 aaPredicted RBP13.73□□□□□ -0.21
USP3-204ENST00000540797 RNF11Q9Y3C5 154 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 NELFEP18615 380 aaKnown RBP13.73□□□□□ -0.21
USP3-204ENST00000540797 SLC7A1P30825 629 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 SUOXP51687 545 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 DSTNP60981 165 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 XIAPP98170 497 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 FAM47BQ8NA70 645 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 MRPS26Q9BYN8 205 aaKnown RBP13.73□□□□□ -0.21
USP3-204ENST00000540797 BCL2L14Q9BZR8 327 aa13.73□□□□□ -0.21
USP3-204ENST00000540797 MCOLN1Q9GZU1 580 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms