RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 CNTN6Q9UQ52 1028 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 WDR62O43379 1518 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 ZNF536O15090 1300 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 ABHD14A-ACY1A0A1B0GW23 586 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 A0A1W2PPL8 197 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 SLC33A1O00400 549 aaPredicted RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 ARL6IP5O75915 188 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 FABP1P07148 127 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 CDH5P33151 784 aaPredicted RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 PNPLA4P41247 253 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 NUMBP49757 651 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 PRKXP51817 358 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 GBX2P52951 348 aaPredicted RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 INTS6LQ5JSJ4 861 aaKnown RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 TANGO2Q6ICL3 276 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 DOK6Q6PKX4 331 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 CRYBG2Q8N1P7 616 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 RIPOR3Q96MK2 946 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 OR4K3Q96R72 315 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 F5H5T6 163 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 OAS1P00973 400 aaKnown RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 GKN3PP0CG01 181 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 TAF6P49848 677 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 INHBCP55103 352 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 MC1RQ01726 317 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 RFTN1Q14699 578 aaPredicted RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 ABCA11PQ4W5N1 156 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 FAM83HQ6ZRV2 1179 aaPredicted RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 LACC1Q8IV20 430 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 TTLL6Q8N841 843 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 RHOXF1Q8NHV9 184 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 C2CD4CQ8TF44 421 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 SHC3Q92529 594 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 SGCDQ92629 289 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 TMEM159Q96B96 161 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 SPATA33Q96N06 139 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 FAM118AQ9NWS6 357 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 GPSM3Q9Y4H4 160 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 RAPGEF6Q8TEU7 1601 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 WASHC1A8K0Z3 465 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 HSBP1L1C9JCN9 74 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 IRF1P10914 325 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 CAMLGP49069 296 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 CCR4P51679 360 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 P2RX3P56373 397 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 PRKCZQ05513 592 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 PTPRNQ16849 979 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 HECTD2Q5U5R9 776 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 SLC25A36Q96CQ1 311 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 MALSU1Q96EH3 234 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 NGLY1Q96IV0 654 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 VRK1Q99986 396 aaPredicted RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 SYT4Q9H2B2 425 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 PRDM9Q9NQV7 894 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 PRMT7Q9NVM4 692 aaPredicted RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 PTTG3PQ9NZH4 202 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 NYAP2Q9P242 653 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 DNAJC5BQ9UF47 199 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 PIN4Q9Y237 131 aaKnown RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 LRRC7Q96NW7 1537 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 HEG1Q9ULI3 1381 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 C2orf92A0A1B0GVN3 265 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 BHLHE40O14503 412 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 RAB36O95755 333 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 TGFB2P61812 414 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 CERCAMQ5T4B2 595 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 ATG9BQ674R7 924 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 FAM35AQ86V20 835 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 ANKRD46Q86W74 232 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 DNAJB8Q8NHS0 232 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 LINGO1Q96FE5 620 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 MGLLQ99685 303 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 SLC38A1Q9H2H9 487 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 GPN2Q9H9Y4 310 aaPredicted RBP8.56□□□□□ -1.04
YBX3-208ENST00000540447 OXSMQ9NWU1 459 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 COPS3Q9UNS2 423 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 PCDHGA6Q9Y5G7 932 aa8.56□□□□□ -1.04
YBX3-208ENST00000540447 MBD5Q9P267 1494 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 MOXD2PA6NHM9 499 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 ERVV-1B6SEH8 477 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 E5RJQ4 531 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 SCO1O75880 301 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 DCKP27707 260 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 CREB5Q02930 508 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 PTP4A2Q12974 167 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 TATDN3Q17R31 274 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 RNF212Q495C1 297 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 LIPKQ5VXJ0 399 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 IER5Q5VY09 327 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 FOXR2Q6PJQ5 311 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 DDX53Q86TM3 631 aaKnown RBP8.55□□□□□ -1.04
YBX3-208ENST00000540447 PLD5Q8N7P1 536 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 ZNF454Q8N9F8 522 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 OR1J4Q8NGS1 313 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 GPR151Q8TDV0 419 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 PYURFQ96I23 114 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 ZNF354BQ96LW1 612 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 NEDD4LQ96PU5 975 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 LGMNQ99538 433 aa8.55□□□□□ -1.04
YBX3-208ENST00000540447 OR51V1Q9H2C8 321 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms