RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 TAF4O00268 1085 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 E2F3O00716 465 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 PIP5K1BO14986 540 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 GPC4O75487 556 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 MLYCDO95822 493 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 HOXC4P09017 264 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-208ENST00000537004 AK4P27144 223 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-208ENST00000537004 GNPDA1P46926 289 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 B4GALNT1Q00973 533 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 TBL3Q12788 808 aaKnown RBP11.6□□□□□ -0.55
CLIP1-208ENST00000537004 SQLEQ14534 574 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 RBBP7Q16576 425 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 C1orf146Q5VVC0 180 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 RIPOR1Q6ZS17 1223 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 EFL1Q7Z2Z2 1120 aaKnown RBP11.6□□□□□ -0.55
CLIP1-208ENST00000537004 TAF8Q7Z7C8 310 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 TMPRSS12Q86WS5 348 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 DDIASQ8IXT1 998 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 KYQ8NBH2 561 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 FAM46DQ8NEK8 389 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 STMN2Q93045 179 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 RCN3Q96D15 328 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 PANX3Q96QZ0 392 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 HGH1Q9BTY7 390 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 SPATA16Q9BXB7 569 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 ZMIZ1Q9ULJ6 1067 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 CNOT6Q9ULM6 557 aaKnown RBP11.6□□□□□ -0.55
CLIP1-208ENST00000537004 GPR34Q9UPC5 381 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 PRKAB1Q9Y478 270 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 PTGDR2Q9Y5Y4 395 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 PTPRBP23467 1997 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 EME2A4GXA9 379 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 TNFRSF10CO14798 259 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 CRCPO75575 148 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 ESRRBO95718 433 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 S100BP04271 92 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 CAPNS1P04632 268 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 KELP23276 732 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 ILKQ13418 452 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 TTLL9Q3SXZ7 439 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 PGM2L1Q6PCE3 622 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 SYVN1Q86TM6 617 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 NRROSQ86YC3 692 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 HMGCLL1Q8TB92 370 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 ABCG4Q9H172 646 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 TUBB1Q9H4B7 451 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 FAM83DQ9H4H8 585 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 AKTIPQ9H8T0 292 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 LATS2Q9NRM7 1088 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 NOP53Q9NZM5 478 aaKnown RBP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 ADAMTS6Q9UKP5 1117 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 TMPRSS11EQ9UL52 423 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 PSMD12O00232 456 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 CCNT2O60583 730 aaKnown RBP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 KRT36O76013 467 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 PDE5AO76074 875 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 PSMG1O95456 288 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 CALRP27797 417 aaKnown RBP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 PRDX3P30048 256 aaKnown RBP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 ACTR3P61158 418 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 CYP4F3Q08477 520 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 FASTKQ14296 549 aaKnown RBP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 RCN1Q15293 331 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 PCBP2Q15366 365 aaKnown RBP eCLIP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 NR0B2Q15466 257 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 ZNF648Q5T619 568 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 HENMT1Q5T8I9 393 aaKnown RBP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 SLC30A9Q6PML9 568 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 C16orf89Q6UX73 402 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 ADAMTSL4Q6UY14 1074 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 GK5Q6ZS86 529 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 GKN2Q86XP6 184 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 DSELQ8IZU8 1212 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 PDPRQ8NCN5 879 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 CFAP61Q8NHU2 1237 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 ZCCHC14Q8WYQ9 949 aaKnown RBP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 N4BP2L2Q92802 583 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 DPEP2Q9H4A9 486 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 KCTD5Q9NXV2 234 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 ZNF225Q9UK10 706 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 PADI4Q9UM07 663 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 CLCA2Q9UQC9 943 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 SLC17A4Q9Y2C5 497 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 OARD1Q9Y530 152 aa11.59□□□□□ -0.55
CLIP1-208ENST00000537004 TNPO3Q9Y5L0 923 aaKnown RBP11.59□□□□□ -0.55
CLIP1-208ENST00000537004 MGAQ8IWI9 3026 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 CROCCQ5TZA2 2017 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 B4DGG1 531 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 ANP32DO95626 131 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 ALDOCP09972 364 aaKnown RBP11.58□□□□□ -0.56
CLIP1-208ENST00000537004 OR56A5P0C7T3 313 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 LINC00032P0C843 101 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 GNAZP19086 355 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 DUSP3P51452 185 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-208ENST00000537004 DCDC1P59894 354 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 PHKG1Q16816 387 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 C18orf21Q32NC0 220 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-208ENST00000537004 GPRIN3Q6ZVF9 776 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 ZNF765Q7L2R6 523 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 NRSN1Q8IZ57 195 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms