RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 H7C423 109 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 EPHB6O15197 1021 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 SLCO2B1O94956 709 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 NXPH2O95156 264 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 ATP5BP06576 529 aaKnown RBP2.47□□□□□ -2.01
CD44-238ENST00000534296 OR52Z1P0C646 297 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 CDH3P22223 829 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 CA4P22748 312 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 JAK1P23458 1154 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 ACAT1P24752 427 aaKnown RBP2.47□□□□□ -2.01
CD44-238ENST00000534296 ALDH3A2P51648 485 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 PPP5CP53041 499 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 RBP5P82980 135 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 ACSM1Q08AH1 577 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 DMPKQ09013 629 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 PTK6Q13882 451 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 HYAL4Q2M3T9 481 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 TWISTNBQ3B726 338 aaPredicted RBP2.47□□□□□ -2.01
CD44-238ENST00000534296 MCMDC2Q4G0Z9 681 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 ODF2Q5BJF6 829 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 GRTP1Q5TC63 336 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 C20orf194Q5TEA3 1177 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 LCN1P1Q5VSP4 162 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 BHLHB9Q6PI77 547 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 Q6ZSR9 355 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 CCDC91Q7Z6B0 441 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 LGI2Q8N0V4 545 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 TRIML1Q8N9V2 468 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 KCNE4Q8WWG9 221 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 ARHGAP45Q92619 1136 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 PROX1Q92786 737 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 EXT2Q93063 718 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 FAM162AQ96A26 154 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 DHX58Q96C10 678 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 OTUB1Q96FW1 271 aaPredicted RBP2.47□□□□□ -2.01
CD44-238ENST00000534296 PGM2Q96G03 612 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 RBM4BQ9BQ04 359 aaKnown RBP2.47□□□□□ -2.01
CD44-238ENST00000534296 FUCA2Q9BTY2 467 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 CLEC7AQ9BXN2 247 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 S1PR5Q9H228 398 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 RNF121Q9H920 327 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 PELI2Q9HAT8 420 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 CDH20Q9HBT6 801 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 ZCCHC17Q9NP64 241 aaKnown RBP2.47□□□□□ -2.01
CD44-238ENST00000534296 SERINC1Q9NRX5 453 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 PDRG1Q9NUG6 133 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 INTS9Q9NV88 658 aaKnown RBP2.47□□□□□ -2.01
CD44-238ENST00000534296 B3GAT1Q9P2W7 334 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 POLLQ9UGP5 575 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 GTF3C4Q9UKN8 822 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 NOL7Q9UMY1 257 aaKnown RBP2.47□□□□□ -2.01
CD44-238ENST00000534296 ITM2BQ9Y287 266 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 DISP3Q9P2K9 1392 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 HTR3EA5X5Y0 456 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 HEPACAM2A8MVW5 462 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 TRIM77I1YAP6 450 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 ARPC2O15144 300 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 AP5Z1O43299 807 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 STX6O43752 255 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 SNX3O60493 162 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 CRCPO75575 148 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 DFFBO76075 338 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 PGLSO95336 258 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 ACSL3O95573 720 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 IGHV2-70P01814 119 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 FRMD6-AS1P0C7T7 363 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 DANCRP0C864 163 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 EPORP19235 508 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 ZNF10P21506 573 aaPredicted RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 AZGP1P25311 298 aaKnown RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 PTPN3P26045 913 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 CDC25CP30307 473 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 CSTF2P33240 577 aaKnown RBP eCLIP2.46□□□□□ -2.02
CD44-238ENST00000534296 LHX1P48742 406 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 NPY4RP50391 375 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 HUNKP57058 714 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 SLC8A3P57103 927 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 PNRC1Q12796 327 aaPredicted RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 ILF2Q12905 390 aaKnown RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 BFSP1Q12934 665 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 VEZF1Q14119 521 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 P2RY6Q15077 328 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 UGCGQ16739 394 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 HLA-BQ31612 363 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 PDLIM3Q53GG5 364 aaPredicted RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 FGD3Q5JSP0 725 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 CYP4A22Q5TCH4 519 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 PRR27Q6MZM9 219 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 CAVIN1Q6NZI2 390 aaKnown RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 CASC4Q6P4E1 433 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 FIP1L1Q6UN15 594 aaKnown RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 IL27RAQ6UWB1 636 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 FAM198BQ6UWH4 519 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 MSANTD1Q6ZTZ1 278 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 NUP54Q7Z3B4 507 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 DNAJB7Q7Z6W7 309 aaPredicted RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 TIGD4Q8IY51 512 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 ZNF595Q8IYB9 648 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 ZNF440Q8IYI8 595 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 OR8H3Q8N146 312 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms