RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 SDCBP2Q9H190 292 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 MAP4K5Q9Y4K4 846 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 C17orf113A0A1B0GUU1 675 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 A8MXE2 369 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 GABRDO14764 452 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 RDH16O75452 317 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 SLITRK3O94933 977 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 ICAM3P32942 547 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 DPP6P42658 865 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 MC1RQ01726 317 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 TMEM62Q0P6H9 643 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 DUSP4Q13115 394 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 GK2Q14410 553 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 ANKRD22Q5VYY1 191 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 ALG1LQ6GMV1 187 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 KIAA0930Q6ICG6 404 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 C6orf89Q6UWU4 347 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 OTOP1Q7RTM1 612 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 SSX9Q7RTT3 188 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 NOXA1Q86UR1 476 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 SPATA6LQ8N4H0 392 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 GALNT11Q8NCW6 608 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 HAVCR2Q8TDQ0 301 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 NKD1Q969G9 470 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 PYURFQ96I23 114 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 OR52B2Q96RD2 323 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 NT5DC2Q9H857 520 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 HIF3AQ9Y2N7 669 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 HCN4Q9Y3Q4 1203 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 TCAF1Q9Y4C2 921 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 ERCC6L2Q5T890 1561 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 CNTN5O94779 1100 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 RPL10P27635 214 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 CAMLGP49069 296 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 CDH11P55287 796 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ST3GAL3Q11203 375 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 PEA15Q15121 130 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC25A52Q3SY17 297 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 C14orf28Q4W4Y0 310 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 TMEM41BQ5BJD5 291 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 METTL11BQ5VVY1 283 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 PPP2R2DQ66LE6 453 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 AADACL2Q6P093 401 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 DOK6Q6PKX4 331 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 GSG1LQ6UXU4 331 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ZER1Q7Z7L7 766 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 SKA3Q8IX90 412 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF101Q8IZC7 436 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 OR8K3Q8NH51 312 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 CHPT1Q8WUD6 406 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 OSTF1Q92882 214 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC29A3Q9BZD2 475 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ABCG5Q9H222 651 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 TIGARQ9NQ88 270 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 UFSP2Q9NUQ7 469 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 TAS2R14Q9NYV8 317 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ACTR10Q9NZ32 417 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 HACL1Q9UJ83 578 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ABT1Q9ULW3 272 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ST14Q9Y5Y6 855 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 A0A0J9YVX5 310 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 WASHC1A8K0Z3 465 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 WASH3PC4AMC7 463 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 PIP5K1BO14986 540 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 TP73O15350 636 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 SCAF4O95104 1147 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 MAOAP21397 527 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 RPS12P25398 132 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 PITPNBP48739 271 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 DGKGP49619 791 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ACTBP60709 375 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ACTG1P63261 375 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 PFKPQ01813 784 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 RAP1GAP2Q684P5 730 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 RPL13AP3Q6NVV1 102 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 ANKRD54Q6NXT1 300 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 WASH2PQ6VEQ5 465 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 CLIP4Q8N3C7 705 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 OR8K5Q8NH50 307 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 RAET1EQ8TD07 263 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 STK35Q8TDR2 534 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 CHFRQ96EP1 664 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC41A3Q96GZ6 507 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 OR2M4Q96R27 311 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 KCNJ16Q9NPI9 418 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 PCDHGA8Q9Y5G5 932 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 NRKQ7Z2Y5 1582 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 NPEPPSL1A6NEC2 478 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 BOLA2-SMG1P6H3BVE0 249 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 SC5DO75845 299 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 MMP10P09238 476 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 PTGER3P43115 390 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 CDH15P55291 814 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 MRPS10P82664 201 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 SCARB2Q14108 478 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 LASP1Q14847 261 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 RAB39AQ14964 217 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 PTCHD3Q3KNS1 767 aa10.97□□□□□ -0.65
LIMCH1-217ENST00000512946 FAM174BQ3ZCQ3 159 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms