RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ZNF300Q96RE9 604 aaPredicted RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 BBS2Q9BXC9 721 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 RUBCNLQ9H714 662 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 IL1RAPQ9NPH3 570 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 TRPS1Q9UHF7 1281 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 SAMD4AQ9UPU9 718 aaKnown RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 SLC22A14Q9Y267 594 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 WNT9AO14904 365 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 CCNDBP1O95273 360 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 NUDT7P0C024 238 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 KIR3DL1P43629 444 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 SMAD3P84022 425 aaKnown RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 CREMQ03060 361 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 BCL2L1Q07817 233 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 UBE2R2Q712K3 238 aaPredicted RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 DBF4BQ8NFT6 615 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 YIPF6Q96EC8 236 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 VMP1Q96GC9 406 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 SLC22A12Q96S37 553 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 APOL4Q9BPW4 351 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 TRPM5Q9NZQ8 1165 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 M0QX08 132 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 FPGTO14772 594 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 PCDHGA12O60330 932 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 IGHA2P01877 340 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 DBTP11182 482 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 HOXA9P31269 272 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 KRT20P35900 424 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 FCGRTP55899 365 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 CDH18Q13634 790 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 MAD2L1BPQ15013 274 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 ZC3H12BQ5HYM0 836 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 LRIF1Q5T3J3 769 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 SLC32A1Q9H598 525 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 ITM2CQ9NQX7 267 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 SLCO3A1Q9UIG8 710 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 EFCAB9A8MZ26 197 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 INPPL1O15357 1258 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 TBX1O43435 398 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 PRAMEF4O60810 478 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 MTX2O75431 263 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 TGM1P22735 817 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 ACRV1P26436 265 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 NUDT6P53370 316 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 TPTEP56180 551 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 IL18R1Q13478 541 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 BOP1Q14137 746 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 VMACQ2NL98 169 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 SOWAHCQ53LP3 525 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 COLEC12Q5KU26 742 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 SYT6Q5T7P8 510 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 PRAMEF9Q5VWM5 478 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 KDM4DQ6B0I6 523 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 NEK5Q6P3R8 708 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 BEND7Q8N7W2 519 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 GPR26Q8NDV2 337 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 OR52E4Q8NGH9 312 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 ELMO1Q92556 727 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 HSH2DQ96JZ2 352 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 TTPALQ9BTX7 342 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 REEP1Q9H902 201 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 PCDHGB1Q9Y5G3 927 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 MYO1DO94832 1006 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 FABP3P05413 133 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 ITGAMP11215 1152 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 TNFRSF1BP20333 461 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 DNAJA1P31689 397 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 CCR7P32248 378 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 MVKQ03426 396 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 TTLL9Q3SXZ7 439 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 SYT12Q8IV01 421 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 P3H2Q8IVL5 708 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 PSD4Q8NDX1 1056 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 PATJQ8NI35 1801 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 BCL7CQ8WUZ0 217 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 PROX1Q92786 737 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 DNASE1L2Q92874 299 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 MAL2Q969L2 176 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 ASIC4Q96FT7 647 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 KCNC2Q96PR1 638 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 MTERF1Q99551 399 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 C6orf62Q9GZU0 229 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 TM9SF3Q9HD45 589 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 NECTIN3Q9NQS3 549 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 THUMPD1Q9NXG2 353 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 PIKFYVEQ9Y2I7 2098 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 TTC34A8MYJ7 566 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 DNAJB5O75953 348 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 KCNK5O95279 499 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 RPLP2P05387 115 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 FPR1P21462 350 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 ACVR2AP27037 513 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 NOXRED1Q6NXP6 359 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 SLIRPQ9GZT3 109 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 DCSTAMPQ9H295 470 aa8.99□□□□□ -0.97
LIMCH1-215ENST00000512632 LOC100506127A0A0U1RQW1 187 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 HTR3EA5X5Y0 456 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 COQ9O75208 318 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 TRBC1P01850 177 aa8.98□□□□□ -0.97
LIMCH1-215ENST00000512632 PRPS2P11908 318 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms