RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ZNF876PQ49A33 203 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 FILIP1LQ4L180 1135 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 TEX35Q5T0J7 233 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 CWC27Q6UX04 472 aaKnown RBP2.03□□□□□ -2.08
HMGB1-208ENST00000490788 C4orf50Q6ZRC1 276 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 CCDC80Q76M96 950 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 GALNT5Q7Z7M9 940 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 PTOV1Q86YD1 416 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 KLHDC8BQ8IXV7 354 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 RPAP2Q8IXW5 612 aaPredicted RBP2.03□□□□□ -2.08
HMGB1-208ENST00000490788 CEP57L1Q8IYX8 460 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 MYOCDQ8IZQ8 938 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 TMCO5AQ8N6Q1 288 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 WDSUB1Q8N9V3 476 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 SLC38A9Q8NBW4 561 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 ZNF397Q8NF99 534 aaPredicted RBP2.03□□□□□ -2.08
HMGB1-208ENST00000490788 CTCFLQ8NI51 663 aaPredicted RBP2.03□□□□□ -2.08
HMGB1-208ENST00000490788 GOLGA5Q8TBA6 731 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 FAM81AQ8TBF8 368 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 TRPC4APQ8TEL6 797 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 TCP11Q8WWU5 503 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 PIBF1Q8WXW3 757 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 ARNTL2Q8WYA1 636 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 SMPDL3BQ92485 455 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 USP6NLQ92738 828 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 SYAP1Q96A49 352 aaPredicted RBP2.03□□□□□ -2.08
HMGB1-208ENST00000490788 CENPTQ96BT3 561 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 SAT2Q96F10 170 aaPredicted RBP2.03□□□□□ -2.08
HMGB1-208ENST00000490788 PGAM5Q96HS1 289 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 RSRC1Q96IZ7 334 aaKnown RBP2.03□□□□□ -2.08
HMGB1-208ENST00000490788 EGLN2Q96KS0 407 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 CCDC114Q96M63 670 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 PGLYRP2Q96PD5 576 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 F2RL3Q96RI0 385 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 GAD1Q99259 594 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 DDOQ99489 341 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 SEMA6AQ9H2E6 1030 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 RPAP3Q9H6T3 665 aaPredicted RBP2.03□□□□□ -2.08
HMGB1-208ENST00000490788 SYNCQ9H7C4 482 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 DBNDD1Q9H9R9 158 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 APOBEC3GQ9HC16 384 aaKnown RBP2.03□□□□□ -2.08
HMGB1-208ENST00000490788 MYOZ2Q9NPC6 264 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 TRPV5Q9NQA5 729 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 EXOC1Q9NV70 894 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 SETD4Q9NVD3 440 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 DDX43Q9NXZ2 648 aaKnown RBP2.03□□□□□ -2.08
HMGB1-208ENST00000490788 PTTG2Q9NZH5 202 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 RCC2Q9P258 522 aaKnown RBP2.03□□□□□ -2.08
HMGB1-208ENST00000490788 KLHL9Q9P2J3 617 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 CLIP2Q9UDT6 1046 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 SWAP70Q9UH65 585 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 BARX2Q9UMQ3 279 aaPredicted RBP2.03□□□□□ -2.08
HMGB1-208ENST00000490788 NENFQ9UMX5 172 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 B3GALT5Q9Y2C3 310 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 C2CD2Q9Y426 696 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 CMAHPQ9Y471 501 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 ZFYVE26Q68DK2 2539 aa2.03□□□□□ -2.08
HMGB1-208ENST00000490788 FBN3Q75N90 2809 aa2.03□□□□□ -2.09
HMGB1-208ENST00000490788 KMT2EQ8IZD2 1858 aa2.03□□□□□ -2.09
HMGB1-208ENST00000490788 RIF1Q5UIP0 2472 aaKnown RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 SALL1Q9NSC2 1324 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 MYH14Q7Z406 1995 aaKnown RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 A0A1W2PP11 408 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 BICDL2A1A5D9 508 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 FRMD3A2A2Y4 597 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CTAGE9A4FU28 777 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TMEM8BA6NDV4 472 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 PGPEP1LA6NFU8 196 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 DUXAA6NLW8 204 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 ERVV-2B6SEH9 535 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 PTGES3LE9PB15 166 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 F5H0A9 414 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 J3QR06 171 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 ATP8B1O43520 1251 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 GPR137BO60478 399 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 ZBED4O75132 1171 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF217O75362 1048 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 BBOX1O75936 387 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CGAP01215 116 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 PRB1P04280 392 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 LDHCP07864 332 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CTAGE8P0CG41 777 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CKMT2P17540 419 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TRIM21P19474 475 aaKnown RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 MSH3P20585 1137 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TNFAIP3P21580 790 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 HRH2P25021 359 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 EPHA2P29317 976 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TIMP3P35625 211 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 MATR3P43243 847 aaKnown RBP eCLIP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 GLIPR1P48060 266 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CLK1P49759 484 aaKnown RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF131P52739 623 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CRIP2P52943 208 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CLNS1AP54105 237 aaKnown RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TPM4P67936 248 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 NUCB2P80303 420 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 PPP2R2BQ00005 443 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 GAGE2BQ13066 116 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TMED1Q13445 227 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms