RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 NXPH1P58417 271 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 EMX2Q04743 252 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 STX5Q13190 355 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 E2F2Q14209 437 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 NR6A1Q15406 480 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 TCEA2Q15560 299 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 ZRSR2Q15696 482 aaKnown RBP13.74□□□□□ -0.21
CUX1-209ENST00000487284 LPAL2Q16609 132 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 WASHC2DQ5SRD0 308 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 PARGQ86W56 976 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 MYLK4Q86YV6 388 aaPredicted RBP13.74□□□□□ -0.21
CUX1-209ENST00000487284 DCP2Q8IU60 420 aaKnown RBP13.74□□□□□ -0.21
CUX1-209ENST00000487284 DCUN1D3Q8IWE4 304 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 SCUBE1Q8IWY4 988 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 PARP9Q8IXQ6 854 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 ULK2Q8IYT8 1036 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 KYQ8NBH2 561 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 SPDYE1Q8NFV5 336 aaPredicted RBP13.74□□□□□ -0.21
CUX1-209ENST00000487284 OR9I1Q8NGQ6 314 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 MAGEC3Q8TD91 643 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 PIGKQ92643 395 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 PPP3R2Q96LZ3 170 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 OR4K3Q96R72 315 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 HBEGFQ99075 208 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 THTPAQ9BU02 230 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 SLC25A23Q9BV35 468 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 TMEM168Q9H0V1 697 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 EFCAB1Q9HAE3 211 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 FARSBQ9NSD9 589 aaKnown RBP13.74□□□□□ -0.21
CUX1-209ENST00000487284 TMEM45AQ9NWC5 275 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 NDE1Q9NXR1 346 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 ACSL5Q9ULC5 683 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 ZNF490Q9ULM2 529 aaPredicted RBP13.74□□□□□ -0.21
CUX1-209ENST00000487284 KCNK6Q9Y257 313 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 DGKBQ9Y6T7 804 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.74□□□□□ -0.21
CUX1-209ENST00000487284 A0A1B0GVT2 93 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 SERTM1A2A2V5 107 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 VILLO15195 856 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 RGS14O43566 566 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 RASGRP1O95267 797 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 ATP6V1G2O95670 118 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 SNRPB2P08579 225 aaKnown RBP13.73□□□□□ -0.21
CUX1-209ENST00000487284 JUPP14923 745 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 GNSP15586 552 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 ZNF33BQ06732 778 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 CHIT1Q13231 466 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 CPSF6Q16630 551 aaKnown RBP eCLIP13.73□□□□□ -0.21
CUX1-209ENST00000487284 PDCD4Q53EL6 469 aaKnown RBP13.73□□□□□ -0.21
CUX1-209ENST00000487284 LIPJQ5W064 366 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 PAOXQ6QHF9 649 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 C16orf89Q6UX73 402 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 LRRC56Q8IYG6 542 aaPredicted RBP13.73□□□□□ -0.21
CUX1-209ENST00000487284 DEFB107AQ8IZN7 70 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 TFGQ92734 400 aaPredicted RBP13.73□□□□□ -0.21
CUX1-209ENST00000487284 RAD51AP1Q96B01 352 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 MED8Q96G25 268 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 SGPP1Q9BX95 441 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 DENND2DQ9H6A0 471 aaPredicted RBP13.73□□□□□ -0.21
CUX1-209ENST00000487284 GPRC5BQ9NZH0 403 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 CIDEBQ9UHD4 219 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 SNX6Q9UNH7 406 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 ASF1AQ9Y294 204 aa13.73□□□□□ -0.21
CUX1-209ENST00000487284 HEATR5BQ9P2D3 2071 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 NPIPB8E9PQR5 432 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 FBP2O00757 339 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 TNFP01375 233 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 RPN2P04844 631 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 SLC35G4P0C7Q5 338 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 ERGP11308 486 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 AK4P27144 223 aaPredicted RBP13.72□□□□□ -0.21
CUX1-209ENST00000487284 HALP42357 657 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 CASP2P42575 452 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 C21orf59P57076 290 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 TBPL1P62380 186 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 CTBSQ01459 385 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 IRF8Q02556 426 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 RPS6KA2Q15349 733 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 AP5B1Q2VPB7 878 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 PRAMEF14Q5SWL7 426 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 PEAR1Q5VY43 1037 aaPredicted RBP13.72□□□□□ -0.21
CUX1-209ENST00000487284 CAPRIN2Q6IMN6 1127 aaKnown RBP13.72□□□□□ -0.21
CUX1-209ENST00000487284 PGM2L1Q6PCE3 622 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 SYT12Q8IV01 421 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 SYTL1Q8IYJ3 562 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 PHACTR4Q8IZ21 702 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 DSELQ8IZU8 1212 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 PGAM4Q8N0Y7 254 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 FNDC5Q8NAU1 212 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 PPFIBP2Q8ND30 876 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 OR5AR1Q8NGP9 310 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 CCL4L1Q8NHW4 92 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 TSPEARQ8WU66 669 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 CLPTM1LQ96KA5 538 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 C1orf50Q9BV19 199 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 OSGEPL1Q9H4B0 414 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 TRNAU1APQ9NX07 287 aaKnown RBP13.72□□□□□ -0.21
CUX1-209ENST00000487284 ASIC5Q9NY37 505 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 ZIM2Q9NZV7 527 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 SUSD2Q9UGT4 822 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms