RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TRPC4Q9UBN4 977 aa16.34■□□□□ 0.21
VIM-204ENST00000478746 TEKT2Q9UIF3 430 aa16.34■□□□□ 0.21
VIM-204ENST00000478746 CDC14AQ9UNH5 594 aa16.34■□□□□ 0.21
VIM-204ENST00000478746 CPAMD8Q8IZJ3 1885 aa16.33■□□□□ 0.21
VIM-204ENST00000478746 LOC105369274A0A096LPK9 316 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 LOC102723532A0A0G2JNH3 316 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 FAM227AF5H4B4 570 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 MLYCDO95822 493 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 PTMSP20962 102 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 MSNP26038 577 aaKnown RBP16.33■□□□□ 0.2
VIM-204ENST00000478746 CSNK1G2P78368 415 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 ZNF33BQ06732 778 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 GRB7Q14451 532 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 POU6F1Q14863 301 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 CAVIN1Q6NZI2 390 aaKnown RBP16.33■□□□□ 0.2
VIM-204ENST00000478746 MEX3BQ6ZN04 569 aaKnown RBP16.33■□□□□ 0.2
VIM-204ENST00000478746 Q6ZPB1 254 aaPredicted RBP16.33■□□□□ 0.2
VIM-204ENST00000478746 LUZP1Q86V48 1076 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 VRK3Q8IV63 474 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 DCUN1D3Q8IWE4 304 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 OR4N4Q8N0Y3 316 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 ENKD1Q9H0I2 346 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 SPTLC3Q9NUV7 552 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 ZNHIT6Q9NWK9 470 aaKnown RBP16.33■□□□□ 0.2
VIM-204ENST00000478746 GTF3C1Q12789 2109 aa16.33■□□□□ 0.2
VIM-204ENST00000478746 OR51F1A6NGY5 319 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 RASGRF2O14827 1237 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 FANCGO15287 622 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 TTI1O43156 1089 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 OR1I1O60431 355 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 NADKO95544 446 aaPredicted RBP16.32■□□□□ 0.2
VIM-204ENST00000478746 ERVK-10P10266 1014 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 CCR7P32248 378 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 TCEAL1Q15170 157 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 TTC23LQ6PF05 361 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 DARS2Q6PI48 645 aaKnown RBP16.32■□□□□ 0.2
VIM-204ENST00000478746 UNC5DQ6UXZ4 953 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 NEK10Q6ZWH5 1172 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 CDKL3Q8IVW4 592 aaPredicted RBP16.32■□□□□ 0.2
VIM-204ENST00000478746 ACTL9Q8TC94 416 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 ASZ1Q8WWH4 475 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 CABS1Q96KC9 395 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 CCDC42Q96M95 316 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 GPR137Q96N19 417 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 SPATA13Q96N96 652 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 TTC1Q99614 292 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 MIPEPQ99797 713 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 ZNF700Q9H0M5 742 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 C14orf105Q9NVL8 296 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 IFNKQ9P0W0 207 aa16.32■□□□□ 0.2
VIM-204ENST00000478746 SPG11Q96JI7 2443 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 LOC102723996A0A087X1L8 192 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 A8MUI8 341 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 FFAR3O14843 346 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 GPR42O15529 346 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 PRPF4O43172 522 aaKnown RBP eCLIP16.31■□□□□ 0.2
VIM-204ENST00000478746 GPC4O75487 556 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 RBP3P10745 1247 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 CTNNA2P26232 953 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 EIF3EP60228 445 aaKnown RBP16.31■□□□□ 0.2
VIM-204ENST00000478746 ALDH6A1Q02252 535 aaKnown RBP16.31■□□□□ 0.2
VIM-204ENST00000478746 PCOLCEQ15113 449 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 AMER2Q8N7J2 671 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 C10orf90Q96M02 699 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 DNAJC7Q99615 494 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 CHP1Q99653 195 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 RAB11FIP5Q9BXF6 653 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 GOLPH3Q9H4A6 298 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.31■□□□□ 0.2
VIM-204ENST00000478746 PCDHGB6Q9Y5F9 930 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 KLK4Q9Y5K2 254 aa16.31■□□□□ 0.2
VIM-204ENST00000478746 MACROD2A1Z1Q3 448 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 CCDC162PA2VCL2 907 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 NPIPA5E9PKD4 350 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 GOLGA6L19H0YKK7 550 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 PSMA3P25788 255 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 PSMB5P28074 263 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 FOXN2P32314 431 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 MARCKSL1P49006 195 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 DSG2Q14126 1118 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 PRTGQ2VWP7 1150 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 FBXO42Q6P3S6 717 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 NCCRP1Q6ZVX7 275 aaPredicted RBP16.3■□□□□ 0.2
VIM-204ENST00000478746 KLHDC8BQ8IXV7 354 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 ACBD4Q8NC06 268 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 CA5BP1Q8WTZ4 195 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 IMMP1LQ96LU5 166 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 TUBB6Q9BUF5 446 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 TSSK1BQ9BXA7 367 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 TGIF2Q9GZN2 237 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 TSPAN10Q9H1Z9 355 aaPredicted RBP16.3■□□□□ 0.2
VIM-204ENST00000478746 NHEJ1Q9H9Q4 299 aaPredicted RBP16.3■□□□□ 0.2
VIM-204ENST00000478746 MKKSQ9NPJ1 570 aaPredicted RBP16.3■□□□□ 0.2
VIM-204ENST00000478746 INTUQ9ULD6 942 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 NPIPA1Q9UND3 350 aa16.3■□□□□ 0.2
VIM-204ENST00000478746 RCCD1A6NED2 376 aa16.29■□□□□ 0.2
VIM-204ENST00000478746 MROH6A6NGR9 719 aa16.29■□□□□ 0.2
VIM-204ENST00000478746 NRP2O60462 931 aa16.29■□□□□ 0.2
VIM-204ENST00000478746 APOA4P06727 396 aa16.29■□□□□ 0.2
VIM-204ENST00000478746 ANXA5P08758 320 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms